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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Pathol. Oncol. Res.</journal-id>
<journal-title>Pathology &#x26; Oncology Research</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Pathol. Oncol. Res.</abbrev-journal-title>
<issn pub-type="epub">1532-2807</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">1611593</article-id>
<article-id pub-id-type="doi">10.3389/pore.2024.1611593</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Pathology and Oncology Archive</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>
<italic>RICTOR</italic> amplification is associated with Rictor membrane staining and does not correlate with PD-L1 expression in lung squamous cell carcinoma</article-title>
<alt-title alt-title-type="left-running-head">Krencz et al.</alt-title>
<alt-title alt-title-type="right-running-head">
<ext-link ext-link-type="uri" xlink:href="https://doi.org/10.3389/pore.2024.1611593">10.3389/pore.2024.1611593</ext-link>
</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>Krencz</surname>
<given-names>Ildik&#xf3;</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Sztankovics</surname>
<given-names>D&#xe1;niel</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2130874/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Sebesty&#xe9;n</surname>
<given-names>Anna</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/690235/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>P&#xe1;pay</surname>
<given-names>Judit</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1472994/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Dank&#xf3;</surname>
<given-names>Titanilla</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2238474/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Moldvai</surname>
<given-names>Dorottya</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1629896/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Lutz</surname>
<given-names>Elmar</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/2707361/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Khoor</surname>
<given-names>Andras</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Department of Pathology and Experimental Cancer Research</institution>, <institution>Semmelweis University</institution>, <addr-line>Budapest</addr-line>, <country>Hungary</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Department of Laboratory Medicine and Pathology</institution>, <institution>Mayo Clinic</institution>, <addr-line>Jacksonville</addr-line>, <addr-line>FL</addr-line>, <country>United States</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>
<bold>Edited by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/701717/overview">J&#xf3;zsef T&#xed;m&#xe1;r</ext-link>, Semmelweis University, Hungary</p>
</fn>
<corresp id="c001">&#x2a;Correspondence: Andras Khoor, <email>khoor.andras@mayo.edu</email>
</corresp>
</author-notes>
<pub-date pub-type="epub">
<day>19</day>
<month>04</month>
<year>2024</year>
</pub-date>
<pub-date pub-type="collection">
<year>2024</year>
</pub-date>
<volume>30</volume>
<elocation-id>1611593</elocation-id>
<history>
<date date-type="received">
<day>17</day>
<month>11</month>
<year>2023</year>
</date>
<date date-type="accepted">
<day>04</day>
<month>04</month>
<year>2024</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2024 Krencz, Sztankovics, Sebesty&#xe9;n, P&#xe1;pay, Dank&#xf3;, Moldvai, Lutz and Khoor.</copyright-statement>
<copyright-year>2024</copyright-year>
<copyright-holder>Krencz, Sztankovics, Sebesty&#xe9;n, P&#xe1;pay, Dank&#xf3;, Moldvai, Lutz and Khoor</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>
<italic>RICTOR</italic> gene, which encodes the scaffold protein of mTORC2, can be amplified in various tumor types, including squamous cell carcinoma (SCC) of the lung. <italic>RICTOR</italic> amplification can lead to hyperactivation of mTORC2 and may serve as a targetable genetic alteration, including in lung SCC patients with no PD-L1 expression who are not expected to benefit from immune checkpoint inhibitor therapy. This study aimed to compare <italic>RICTOR</italic> amplification detected by fluorescence <italic>in situ</italic> hybridization (FISH) with Rictor and PD-L1 protein expression detected by immunohistochemistry (IHC) in SCC of the lung. The study was complemented by analysis of the publicly available Lung Squamous Cell Carcinoma (TCGA, Firehose legacy) dataset. <italic>RICTOR</italic> amplification was observed in 20% of our cases and 16% of the lung SCC cases of the TCGA dataset. Rictor and PD-L1 expression was seen in 74% and 44% of the cases, respectively. Rictor IHC showed two staining patterns: membrane staining (16% of the cases) and cytoplasmic staining (58% of the cases). Rictor membrane staining predicted <italic>RICTOR</italic> amplification as detected by FISH with high specificity (95%) and sensitivity (70%). We did not find any correlation between <italic>RICTOR</italic> amplification and PD-L1 expression; <italic>RICTOR</italic> amplification was detected in 18% and 26% of PD-L1 positive and negative cases, respectively. The TCGA dataset analysis showed similar results; <italic>RICTOR</italic> copy number correlated with Rictor mRNA and protein expression but showed no association with PD-L1 mRNA and protein expression. In conclusion, the correlation between <italic>RICTOR</italic> amplification and Rictor membrane staining suggests that the latter can potentially be used as a surrogate marker to identify lung SCC cases with <italic>RICTOR</italic> amplification. Since a significant proportion of PD-L1 negative SCC cases harbor <italic>RICTOR</italic> amplification, analyzing PD-L1 negative tumors by <italic>RICTOR</italic> FISH or Rictor IHC can help select patients who may benefit from mTORC2 inhibitor therapy.</p>
</abstract>
<kwd-group>
<kwd>
<italic>RICTOR</italic> amplification</kwd>
<kwd>Rictor expression</kwd>
<kwd>mTORC2</kwd>
<kwd>PD-L1</kwd>
<kwd>lung squamous cell carcinoma</kwd>
</kwd-group>
</article-meta>
</front>
<body>
<sec id="s1">
<title>Introduction</title>
<p>Despite the significant advances that have been made in the diagnosis and treatment of non-small cell lung cancer (NSCLC) in the past decades, it remains the leading cause of cancer death worldwide [<xref ref-type="bibr" rid="B1">1</xref>]. Among NSCLCs, squamous cell carcinoma (SCC) is one of the most common histological subtypes, accounting for 30%&#x2013;35% of all NSCLC cases [<xref ref-type="bibr" rid="B2">2</xref>].</p>
<p>Lung SCC is strongly associated with tobacco smoking and arises mostly in the central part of the lungs [<xref ref-type="bibr" rid="B3">3</xref>]. There is growing evidence that it is more heterogeneous than it is suggested by its three histologic subtypes (keratinizing, non-keratinizing, and basaloid) [<xref ref-type="bibr" rid="B4">4</xref>].</p>
<p>While there have been significant breakthroughs in targeted therapies for lung adenocarcinoma, most patients with advanced SCC are treated with immune checkpoint inhibitors (ICIs), platinum-based chemotherapy, or a combination of the two [<xref ref-type="bibr" rid="B5">5</xref>]. For SCCs with no PD-L1 expression, platinum-based chemotherapy remains the main treatment option [<xref ref-type="bibr" rid="B6">6</xref>]. Therefore, there is an urgent need to develop new targeted therapies for patients with SCC.</p>
<p>Protein complexes mTOR complex 1 (mTORC1) and mTOR complex 2 (mTORC2) are integral components of the phosphatidylinositol 3-kinase (PI3K)/protein kinase B (Akt)/mammalian target of rapamycin (mTOR) pathway. The main functions of mTORC1 include the regulation of cell growth and proliferation, whereas mTORC2 plays essential roles in cytoskeletal reorganization and cell survival [<xref ref-type="bibr" rid="B7">7</xref>]. Rictor (encoded by the <italic>RICTOR</italic> gene) is the scaffold protein of mTORC2 (<xref ref-type="fig" rid="F1">Figure 1</xref>). Amplification of <italic>RICTOR</italic> has been reported in various cancer types, including approximately 10% of lung SCCs [<xref ref-type="bibr" rid="B8">8</xref>&#x2013;<xref ref-type="bibr" rid="B10">10</xref>]. Like <italic>PIK3CA</italic> copy number gain and <italic>PTEN</italic> loss, <italic>RICTOR</italic> amplification affects the PI3K/Akt/mTOR pathway. <italic>PIK3CA</italic> copy number gain and <italic>PTEN</italic> loss mostly alter mTORC1 activity, whereas <italic>RICTOR</italic> amplification primarily results in the alteration of mTORC2 [<xref ref-type="bibr" rid="B11">11</xref>].</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption>
<p>The mTOR complex 2. The <italic>RICTOR</italic> gene encodes for the scaffold protein of mTORC2 and can be amplified in different malignancies, including squamous cell carcinoma of the lung.</p>
</caption>
<graphic xlink:href="pore-30-1611593-g001.tif"/>
</fig>
<p>
<italic>RICTOR</italic> fluorescence <italic>in situ</italic> hybridization (FISH) is considered the diagnostic standard for the detection of <italic>RICTOR</italic> amplification [<xref ref-type="bibr" rid="B8">8</xref>]. Immunohistochemistry (IHC) is an acceptable, cost-effective alternative to detect certain molecular alterations, including <italic>ALK</italic> and <italic>ROS1</italic> rearrangements [<xref ref-type="bibr" rid="B12">12</xref>, <xref ref-type="bibr" rid="B13">13</xref>]. However, Rictor IHC has never been compared to <italic>RICTOR</italic> FISH in the SCC of the lung.</p>
<p>The purpose of this study was to compare <italic>RICTOR</italic> amplification as detected by FISH with Rictor expression as detected by IHC in SCC of the lung. Since PD-L1 negative tumors are typically ineligible for immune checkpoint inhibitor therapy, finding a potentially targetable genetic alteration such as <italic>RICTOR</italic> amplification is especially important for patients with PD-L1 negative advanced SCC. Therefore, we also examined the relationship between <italic>RICTOR</italic> amplification and PD-L1 expression in these tumors.</p>
</sec>
<sec sec-type="materials|methods" id="s2">
<title>Materials and methods</title>
<sec id="s2-1">
<title>Patients</title>
<p>A total of 50 samples, including 40 surgical resection specimens and 10 small biopsies of lung SCC cases diagnosed between 1 January 2002 and 31 July 2020 were analyzed in our study. Only primary tumors with SCC histology were included. The tumors were re-reviewed and reclassified according to the 2021 World Health Organization Classification of Thoracic Tumors [<xref ref-type="bibr" rid="B14">14</xref>]. None of the patients received neoadjuvant therapy before surgery or biopsy. Clinicopathological data are summarized in <xref ref-type="table" rid="T1">Table 1</xref>. The study was approved by the Mayo Clinic Institutional Review Board (ID: 18-001887) and the Institutional Ethical Review Board of Semmelweis University (SE KREB 216/2020).</p>
<table-wrap id="T1" position="float">
<label>TABLE 1</label>
<caption>
<p>Clinicopathological data.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th colspan="2" align="left">Characteristics</th>
<th align="left">N (%)</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td colspan="2" align="left">Total no. of the cases</td>
<td align="left">50 (100%)</td>
</tr>
<tr>
<td rowspan="2" align="left">Age</td>
<td align="left">&#x3c;65&#xa0;years</td>
<td align="left">12 (24%)</td>
</tr>
<tr>
<td align="left">&#x2265;65&#xa0;years</td>
<td align="left">38 (76%)</td>
</tr>
<tr>
<td rowspan="2" align="left">Sex</td>
<td align="left">Male</td>
<td align="left">30 (60%)</td>
</tr>
<tr>
<td align="left">Female</td>
<td align="left">20 (40%)</td>
</tr>
<tr>
<td rowspan="3" align="left">Histological subtype</td>
<td align="left">Non-keratinizing</td>
<td align="left">31 (62%)</td>
</tr>
<tr>
<td align="left">Keratinizing</td>
<td align="left">16 (32%)</td>
</tr>
<tr>
<td align="left">Basaloid</td>
<td align="left">3 (6%)</td>
</tr>
<tr>
<td rowspan="3" align="left">Grade</td>
<td align="left">Grade 1</td>
<td align="left">1 (2%)</td>
</tr>
<tr>
<td align="left">Grade 2</td>
<td align="left">33 (66%)</td>
</tr>
<tr>
<td align="left">Grade 3</td>
<td align="left">16 (32%)</td>
</tr>
<tr>
<td rowspan="4" align="left">Stage</td>
<td align="left">IA-B</td>
<td align="left">25 (50%)</td>
</tr>
<tr>
<td align="left">IIA-B</td>
<td align="left">10 (20%)</td>
</tr>
<tr>
<td align="left">IIIA-B</td>
<td align="left">9 (18%)</td>
</tr>
<tr>
<td align="left">N.A.</td>
<td align="left">6 (12%)</td>
</tr>
<tr>
<td rowspan="2" align="left">Procedure</td>
<td align="left">Surgical resection</td>
<td align="left">40 (80%)</td>
</tr>
<tr>
<td align="left">Small biopsy</td>
<td align="left">10 (20%)</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>Abbreviations: N.A., not available.</p>
</fn>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="s2-2">
<title>Fluorescence <italic>in situ</italic> hybridization reaction</title>
<p>FISH was performed on 4&#x2013;&#xb5;m&#x2013;thick sections of the formalin-fixed paraffin-embedded tissue blocks. After pretreatment with Vysis IntelliFISH Pretreatment SSC Solution (Abbott Molecular, Des Plaines, IL, United States) at 79&#xb0;C for 25&#xa0;min, deparaffinized sections were digested using Vysis IntelliFISH Protease (Abbott Molecular) at 38&#xb0;C for 25&#xa0;min. Sections were then exposed to a mixture of <italic>RICTOR</italic> (&#x23;RICTOR-20-OR; Empire Genomics, Buffalo, NY, United States, labeled in orange) and chromosome 5 (Chr5) control (&#x23;CHR05-10-GR; Empire Genomics, labeled in green) probes and Vysis IntelliFISH Hybridization Buffer (Abbott Molecular) at 37&#xb0;C for 2&#xa0;h. Posthybridization wash was performed at 73&#xb0;C for 3&#xa0;min (Vysis IntelliFISH Post-Hybridization Buffer; Abbott Molecular). After air drying, sections were counterstained with DAPI I (Abbott Molecular).</p>
</sec>
<sec id="s2-3">
<title>Fluorescence <italic>in situ</italic> hybridization analysis</title>
<p>Slides were examined under a fluorescence microscope (DM5500 B; Leica, Wetzlar, Germany) focusing on hot spot areas. For each tumor, 30 tumor cell nuclei were evaluated in at least 2 different areas by 2 technicians. Both the mean number of signals per nucleus and the <italic>RICTOR</italic>/Chr5 control ratio were determined. A <italic>RICTOR</italic> copy number of 4 or more and a <italic>RICTOR</italic>/Chr5 ratio of 2 or more were considered positive for <italic>RICTOR</italic> amplification. Otherwise, the case was considered negative (see <xref ref-type="fig" rid="F2">Figure 2</xref>). Images were captured using CytoVision software (Leica).</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption>
<p>Representative images of <italic>RICTOR</italic> FISH, Rictor IHC, and PD-L1 IHC in lung SCC cases. Representative images of <italic>RICTOR</italic> FISH (<italic>RICTOR</italic> and <italic>Chr5</italic> are labeled in orange and green, respectively), Rictor IHC, and PD-L1 IHC in lung SCC cases. The scale bar indicates 10&#xa0;&#x3bc;m on FISH and 50&#xa0;&#x3bc;m on IHC images.</p>
</caption>
<graphic xlink:href="pore-30-1611593-g002.tif"/>
</fig>
</sec>
<sec id="s2-4">
<title>Immunohistochemical staining</title>
<p>Rictor IHC was performed on 4&#x2013;&#xb5;m&#x2013;thick sections of the same blocks. After deparaffinization and blocking endogenous peroxidases, antigen retrieval was performed for 30&#xa0;min (10&#xa0;mM citrate, pH 6.0) in a pressure cooker. Slides were then incubated with an anti-Rictor (1:1000; &#x23;A500-002A; Bethyl Laboratories, Montgomery, TX, United States) primary antibody. Vectastain Universal Elite ABC HRP Kit (Vector Laboratories, Newark, CA, United States) secondary detection system and DAB (Agilent, Santa Clara, CA, United States) chromogen were used to visualize the reactions. The sections were counterstained with hematoxylin.</p>
<p>PD-L1 IHC 22C3 PharmDx reactions were performed on an automated immunostainer (Leica BOND-III; Leica) using the EnVision FLEX visualization system (Agilent) according to the manufacturer&#x2019;s protocols.</p>
</sec>
<sec id="s2-5">
<title>Evaluation of immunohistochemistry</title>
<p>PD-L1 membrane expression was assessed using Tumor Proportion Score (TPS) and was classified into TPS &#x3c; 1%, TPS 1%&#x2013;49%, and TPS &#x2265; 50% categories [<xref ref-type="bibr" rid="B15">15</xref>, <xref ref-type="bibr" rid="B16">16</xref>]. A TPS &#x2265; 1% was considered positive (see <xref ref-type="fig" rid="F2">Figure 2</xref>).</p>
<p>Since there had been no standardized way of analyzing Rictor expression, we evaluated both membrane and cytoplasmic stainings. In the presence of any membrane positivity, the pattern was considered membrane staining. The percentage of stained tumor cells was categorized similarly to that of PD-L1, using TPS &#x3c; 1%, TPS 1%&#x2013;49%, and TPS &#x2265; 50% categories.</p>
</sec>
<sec id="s2-6">
<title>Data collection from the cancer genome atlas</title>
<p>Correlations among copy number alterations for <italic>RICTOR</italic> as well as mRNA (mRNA Seq V2 RSEM) and protein (reverse-phase protein array, RPPA) expression of Rictor and PD-L1 (CD274) was analyzed in the Lung Squamous Cell Carcinoma (TCGA, Firehose Legacy) dataset [<xref ref-type="bibr" rid="B17">17</xref>, <xref ref-type="bibr" rid="B18">18</xref>]. The dataset contains the data of 511 lung SCC patients and was accessed through cBioPortal (accessed on 30th March 2023<xref ref-type="fn" rid="fn1">
<sup>1</sup>
</xref>). The association between <italic>RICTOR</italic> amplification and clinicopathological data was also studied.</p>
</sec>
<sec id="s2-7">
<title>Statistical analysis</title>
<p>Statistical analysis was performed using IBM SPSS Statistics software (version 22; SPSS Inc., Chicago, IL, United States). Descriptive data are expressed as numbers (percentages). Associations with the clinicopathological data were analyzed by the chi-square test. Correlations were evaluated using Spearman correlation. The Kaplan-Meier method was used for the survival analysis. The mean follow-up time was 1,091&#xa0;days. Survival curves were compared by the log-rank method. A <italic>p &#x2264;</italic> 0.05 was defined as statistically significant.</p>
</sec>
</sec>
<sec sec-type="results" id="s3">
<title>Results</title>
<sec id="s3-1">
<title>
<italic>RICTOR</italic> amplification in lung SCC</title>
<p>
<italic>RICTOR</italic> amplification was observed in 10 of 50 cases (20%). The mean (range) <italic>RICTOR</italic> copy number per tumor cells was 6.26 (4.48&#x2013;9.69) in the amplified cases and 2.90 (1.62&#x2013;4.20) in the non-amplified cases. The mean (range) <italic>Chr5</italic> copy number per tumor cells was 1.97 (1.27&#x2013;2.89) in the amplified cases and 1.64 (1.10&#x2013;2.52) in the non-amplified cases.</p>
</sec>
<sec id="s3-2">
<title>Immunohistochemical expression of Rictor in lung SCC</title>
<p>Assessment of Rictor staining had not been standardized previously. Therefore, we separately analyzed membrane staining (<xref ref-type="fig" rid="F3">Figure 3A</xref>) and cytoplasmic staining (<xref ref-type="fig" rid="F3">Figure 3B</xref>) in our study. Membrane staining was observed in 8 cases (16%) and cytoplasmic staining in 29 cases (58%) (<xref ref-type="table" rid="T2">Table 2</xref>). No Rictor expression was seen in 13 cases (26%).</p>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption>
<p>Staining pattern of the Rictor protein and correlation with patient&#x2019;s overall survival. In our study, we evaluated membrane and cytoplasmic staining separately. The figure shows representative images for membrane <bold>(A)</bold> and cytoplasmic <bold>(B)</bold> staining. The scale bar indicates 50&#xa0;&#x3bc;m. Correlation of Rictor staining pattern with overall survival of patients <bold>(C)</bold>. Rictor membrane staining (red) was associated with slightly shorter overall survival as compared to cytoplasmic staining (green) and negative cases (blue).</p>
</caption>
<graphic xlink:href="pore-30-1611593-g003.tif"/>
</fig>
<table-wrap id="T2" position="float">
<label>TABLE 2</label>
<caption>
<p>Immunohistochemical expression of Rictor in squamous cell carcinoma.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="left">Rictor expression</th>
<th align="left">TPS (%)</th>
<th align="left">N (%)</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">Negative</td>
<td align="left">&#x3c;1</td>
<td align="left">13 (26)</td>
</tr>
<tr>
<td rowspan="2" align="left">Positive membrane</td>
<td align="left">1&#x2013;49</td>
<td align="left">3 (6)</td>
</tr>
<tr>
<td align="left">&#x2265;50</td>
<td align="left">5 (10)</td>
</tr>
<tr>
<td rowspan="2" align="left">Positive cytoplasmic</td>
<td align="left">1&#x2013;49</td>
<td align="left">27 (54)</td>
</tr>
<tr>
<td align="left">&#x2265;50</td>
<td align="left">2 (4)</td>
</tr>
<tr>
<td align="left">Total</td>
<td align="left"/>
<td align="left">50 (100)</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="s3-3">
<title>Immunohistochemical expression of PD-L1 in lung SCC</title>
<p>IHC for PD-L1 was positive in 22 of 50 cases (44%) (<xref ref-type="table" rid="T3">Table 3</xref>). TPS was 1%&#x2013;49% in 17 cases and was &#x2265;50% in 5 cases. The remaining 28 cases (56%) were negative.</p>
<table-wrap id="T3" position="float">
<label>TABLE 3</label>
<caption>
<p>Immunohistochemical expression of PD-L1 in squamous cell carcinoma.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="left">PD-L1 expression</th>
<th align="left">TPS (%)</th>
<th align="left">N (%)</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">Negative</td>
<td align="left">&#x3c;1</td>
<td align="left">28 (56)</td>
</tr>
<tr>
<td rowspan="2" align="left">Positive</td>
<td align="left">1&#x2013;49</td>
<td align="left">17 (34)</td>
</tr>
<tr>
<td align="left">&#x2265;50</td>
<td align="left">5 (10)</td>
</tr>
<tr>
<td align="left">Total</td>
<td align="left"/>
<td align="left">46 (100)</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="s3-4">
<title>Concordance between <italic>RICTOR</italic> FISH and Rictor expression</title>
<p>The sensitivity, specificity, and negative and positive predictive values of various Rictor staining patterns are shown in <xref ref-type="table" rid="T4">Table 4</xref>. Rictor membrane staining showed the highest specificity for <italic>RICTOR</italic> amplification (95%). The negative predictive value of Rictor membrane staining was also high (93%).</p>
<table-wrap id="T4" position="float">
<label>TABLE 4</label>
<caption>
<p>Concordance of <italic>RICTOR</italic> FISH and Rictor immunohistochemical results.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="left"/>
<th align="left">Rictor membrane staining (%)</th>
<th align="left">Rictor cytoplasmic staining (%)</th>
<th align="left">Any Rictor staining (%)</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">Sensitivity</td>
<td align="left">70</td>
<td align="left">20</td>
<td align="left">90</td>
</tr>
<tr>
<td align="left">Specificity</td>
<td align="left">95</td>
<td align="left">35</td>
<td align="left">30</td>
</tr>
<tr>
<td align="left">Negative predictive value</td>
<td align="left">93</td>
<td align="left">64</td>
<td align="left">92</td>
</tr>
<tr>
<td align="left">Positive predictive value</td>
<td align="left">78</td>
<td align="left">7</td>
<td align="left">24</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="s3-5">
<title>Concordance between <italic>RICTOR</italic> FISH/Rictor expression and PD-L1 expression</title>
<p>
<italic>RICTOR</italic> amplification was detected in 4 (18%) PD-L1 positive cases and 5 (26%) PD-L1 negative cases, and there was no correlation between <italic>RICTOR</italic> amplification and PD-L1 expression. Similarly, we found no significant correlation between Rictor and PD-L1 expression.</p>
</sec>
<sec id="s3-6">
<title>Correlation of <italic>RICTOR</italic> amplification, Rictor and PD-L1 expression with clinicopathological data and survival</title>
<p>Neither FISH, nor immunohistochemical results showed a correlation with clinicopathological data (including age, sex, histological subtype, grade, and stage). Patients with Rictor membrane staining had a slightly shorter overall survival as compared to patients with Rictor cytoplasmic staining (<italic>p &#x3d;</italic> 0.229) or no Rictor staining (<italic>p &#x3d;</italic> 0.505) (<xref ref-type="fig" rid="F3">Figure 3C</xref>). However, these results were not statistically significant. <italic>RICTOR</italic> amplification and PD-L1 expression did not correlate with survival.</p>
</sec>
<sec id="s3-7">
<title>Associations between <italic>RICTOR</italic> amplification, Rictor, and PD-L1 mRNA and protein expression in the lung squamous cell carcinoma (TCGA, Firehose Legacy) dataset</title>
<p>To strengthen our results, we also performed a similar analysis using data from the Lung Squamous Cell Carcinoma (TCGA, Firehose Legacy) dataset (<italic>N</italic> &#x3d; 511). 501 of these samples were profiled for <italic>RICTOR</italic> copy number alterations, and <italic>RICTOR</italic> amplification was seen in 16% of the cases. We observed a strong positive correlation between <italic>RICTOR</italic> copy number and <italic>RICTOR</italic> mRNA expression (Spearman&#x2019;s R &#x3d; 0.58, <italic>p &#x3c;</italic> 0.001; 498 samples with data in both profiles, see <xref ref-type="fig" rid="F4">Figure 4A</xref>). A weaker positive correlation was detected between <italic>RICTOR</italic> copy number and Rictor protein expression (Spearman&#x2019;s R &#x3d; 0.14, <italic>p &#x3d;</italic> 0.012; 326 samples with data in both profiles, see <xref ref-type="fig" rid="F4">Figure 4B</xref>). However, there was no available information about the intracellular localization of Rictor protein expression. In correlation with our FISH and immunohistochemical analysis, we found no association between <italic>RICTOR</italic> copy number and PD-L1 (<italic>CD274</italic>) mRNA expression (Spearman&#x2019;s R&#x3d; &#x2212;0.06, <italic>p &#x3d;</italic> 0.176; 498 samples with data in both profiles, see <xref ref-type="fig" rid="F4">Figure 4C</xref>) or PD-L1 protein expression (Spearman&#x2019;s R&#x3d; &#x2212;0.02, <italic>p &#x3d;</italic> 0.733; 194 samples with data in both profiles, see <xref ref-type="fig" rid="F4">Figure 4D</xref>).</p>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption>
<p>Correlation between <italic>RICTOR</italic> copy number, <italic>RICTOR</italic> and <italic>CD274</italic> (PD-L1) mRNA, and Rictor and CD274 (PD-L1) protein expression in the Lung Squamous Cell Carcinoma (TCGA, Firehose Legacy) dataset. <bold>(A)</bold> Strong positive correlation between <italic>RICTOR</italic> copy number and <italic>RICTOR</italic> mRNA expression. <bold>(B)</bold> Weak positive correlation between <italic>RICTOR</italic> copy number and Rictor protein expression. <bold>(C)</bold> No correlation between <italic>RICTOR</italic> copy number and <italic>CD274</italic> mRNA and <bold>(D)</bold> PD-L1 protein expression. In addition, to copy number variations, missense (2 patients, <italic>RICTOR</italic> R1299G, <italic>RICTOR</italic> E1633Q) and truncating (1 patient, <italic>RICTOR</italic> Q569&#x2a;) mutations were also present in the <italic>RICTOR</italic> gene, without any known significance.</p>
</caption>
<graphic xlink:href="pore-30-1611593-g004.tif"/>
</fig>
</sec>
<sec id="s3-8">
<title>Associations between <italic>RICTOR</italic> amplification and clinicopathological data in the lung squamous cell carcinoma (TCGA, Firehose Legacy) dataset</title>
<p>The TCGA data analysis confirmed that there is no association between <italic>RICTOR</italic> amplification and overall survival in lung SCC patients (<italic>p &#x3d;</italic> 0.201). Despite most of the cases have been categorized as Squamous Cell Carcinoma NOS based on histology (ICD-O-3: 8070/3), <italic>RICTOR</italic> amplification was seen more frequently in basaloid SCCs (6.33% of the <italic>RICTOR</italic>-amplified cases and 2.13% of the non-amplified cases had basaloid histology). In contrast, <italic>RICTOR</italic> amplification was absent in keratinizing SCCs (none of the <italic>RICTOR</italic>-amplified cases, but 3.08% of the non-amplified cases were keratinizing SCCs). Additionally, we could not find any association between <italic>RICTOR</italic> amplification and any other genetic drivers (<italic>ALK</italic> translocation and <italic>KRAS</italic> mutation status were available in 286 and 15 patients, respectively) or tumor mutational burden.</p>
</sec>
</sec>
<sec sec-type="discussion" id="s4">
<title>Discussion</title>
<p>This is the first study to compare <italic>RICTOR</italic> amplification and Rictor expression in human lung SCC. Using FISH, we observed <italic>RICTOR</italic> amplification in 20% of the cases. This is slightly higher than <italic>RICTOR</italic> amplification in the Lung Squamous Cell Carcinoma (TGCA, Firehose Legacy) dataset or in previous database analyses, where it has been found in 16% and 7.4%&#x2013;15% of SCC cases, respectively [<xref ref-type="bibr" rid="B19">19</xref>, <xref ref-type="bibr" rid="B20">20</xref>]. The difference among various studies may be due to differences in study populations and methods used to detect <italic>RICTOR</italic> amplification. An additional explanation for these differences is the high heterogeneity of RICTOR amplification and overexpression, which has been described previously [<xref ref-type="bibr" rid="B21">21</xref>] and was also found in our study. Given the potential intratumoral heterogeneity of both Rictor and PD-L1 staining [<xref ref-type="bibr" rid="B21">21</xref>&#x2013;<xref ref-type="bibr" rid="B23">23</xref>], we performed both FISH and IHC analysis on whole slides of the tissue blocks, which allows for a higher probability of detecting areas of <italic>RICTOR</italic> amplification and overexpression of a heterogeneous tumor.</p>
<p>Rictor is the scaffold protein for mTORC2, a protein complex interconnected with the PI3K/Akt/mTOR pathway [<xref ref-type="bibr" rid="B24">24</xref>]. The PI3K/Akt/mTOR pathway regulates several essential cellular functions related to environmental signals, including cell proliferation, growth, homeostasis, and metabolism.</p>
<p>Subcellular localization of the PI3K/Akt/mTOR pathway components has been evaluated in various studies. As the first step in the pathway, PI3K generates phosphatidylinositol-3,4,5-triphosphate (PIP3), which binds the pleckstrin homology domain of Akt, recruiting it to the plasma membrane. Once Akt is localized to the plasma membrane, mTORC2 can phosphorylate its Ser473 site, thereby facilitating activation of the PI3K/Akt/mTOR pathway [<xref ref-type="bibr" rid="B20">20</xref>, <xref ref-type="bibr" rid="B25">25</xref>, <xref ref-type="bibr" rid="B26">26</xref>]. In contrast, some studies have demonstrated that mTORC2 can also phosphorylate its substrates (e.g., serum/glucocorticoid regulated kinase 1) using intracellular membranes and subcellular spaces such as the endoplasmic reticulum and the perinuclear compartment [<xref ref-type="bibr" rid="B25">25</xref>, <xref ref-type="bibr" rid="B26">26</xref>]. Additionally, it is also known that Rictor can interact with integrin-linked kinase (ILK), a protein with a multifunctional role in cell-matrix interactions and that the Rictor-ILK complex may contribute to the phosphorylation of Akt on Ser473 [<xref ref-type="bibr" rid="B27">27</xref>, <xref ref-type="bibr" rid="B28">28</xref>]. Consistent with these data, a recent study has described more than 200 proteins that can interact with mTORC2 and possibly regulate its activity and localization [<xref ref-type="bibr" rid="B29">29</xref>]. We observed both membrane and cytoplasmic staining for Rictor in our study. Interestingly, in <italic>RICTOR</italic> amplified cases, Rictor was localized primarily to the plasma membrane, whereas, in non-amplified cases, we found predominantly cytoplasmic staining consistent with intracellular localization.</p>
<p>Previous studies have revealed a positive correlation between <italic>RICTOR</italic> mRNA expression and DNA copy number in NSCLC [<xref ref-type="bibr" rid="B20">20</xref>], which was confirmed with our database analysis. Similarly, we observed a positive correlation between Rictor protein expression and <italic>RICTOR</italic> gene amplification. However, this correlation was strongly dependent on subcellular localization. Rictor membrane staining showed high specificity (95%) and moderate to high sensitivity (77%) for <italic>RICTOR</italic> amplification, whereas the specificity and sensitivity of Rictor cytoplasmic staining were much lower (38% and 11%, respectively). Therefore, our recommendation is to use Rictor membrane staining as a surrogate marker for <italic>RICTOR</italic> gene amplification.</p>
<p>Despite breakthroughs in targeted therapies for lung adenocarcinoma in the past decades, limited progress has been made in the treatment of lung SCC. This seems to be due to the lower frequency of targetable genetic alterations and the less favorable response to small-molecule tyrosine kinase inhibitors [<xref ref-type="bibr" rid="B30">30</xref>, <xref ref-type="bibr" rid="B31">31</xref>]. The PI3K/Akt/mTOR pathway represents a potential therapeutic target [<xref ref-type="bibr" rid="B32">32</xref>]. The activity of mTORC2 can be inhibited by dual mTOR kinase inhibitors, which affect both mTORC1 and mTORC2 (e.g., vistusertib and sapanisertib). They have been used to treat various types of lung cancer, including SCC of the lung, in early-phase clinical trials [<xref ref-type="bibr" rid="B9">9</xref>, <xref ref-type="bibr" rid="B11">11</xref>]. In most of these studies, patients have not been stratified based on the presence of <italic>RICTOR</italic> amplification. A selective mTORC2 inhibitor (JR-AB2-011), which blocks the interaction between Rictor and mTOR, is already available and has been used with promising results in preclinical trials [<xref ref-type="bibr" rid="B33">33</xref>, <xref ref-type="bibr" rid="B34">34</xref>]. Selecting patients with <italic>RICTOR</italic>-amplified tumors may improve the results.</p>
<p>In advanced cases of SCC of the lung, ICIs represent the only widely used therapeutic option besides radiochemotherapy [<xref ref-type="bibr" rid="B6">6</xref>]. Similar to a previous study, which has found no association between gene alterations and PD-L1 expression in advanced lung SCC [<xref ref-type="bibr" rid="B35">35</xref>], we observed no association between PD-L1 expression, a predictive marker for the efficacy of ICIs, and <italic>RICTOR</italic> amplification or Rictor expression. <italic>RICTOR</italic> amplification occurred in PD-L1 positive and negative cases with similar frequency, suggesting that a significant number of the PD-L1 negative cases can be eligible for mTORC2 inhibitor therapy (<xref ref-type="fig" rid="F5">Figure 5</xref>). Additionally, <italic>RICTOR</italic> amplification has been speculated to be responsible for the resistance against chemotherapy, tyrosine kinase inhibitors, and ICIs, leading to tumor progression in various types of cancer [<xref ref-type="bibr" rid="B36">36</xref>&#x2013;<xref ref-type="bibr" rid="B38">38</xref>]. Therefore, analyzing <italic>RICTOR</italic> amplification in lung SCC patients who no longer respond to ICIs can reveal a new targetable alteration in this subpopulation of patients.</p>
<fig id="F5" position="float">
<label>FIGURE 5</label>
<caption>
<p>Recommended testing algorithm for <italic>RICTOR</italic> amplification in lung SCC. Testing algorithm for selecting patients with <italic>RICTOR</italic> amplification who are not eligible for immune checkpoint inhibitor treatment but may benefit from mTOR (C2) inhibitors.</p>
</caption>
<graphic xlink:href="pore-30-1611593-g005.tif"/>
</fig>
<p>Several studies have shown a correlation between mTORC2 activity and metastatic disease [<xref ref-type="bibr" rid="B33">33</xref>, <xref ref-type="bibr" rid="B39">39</xref>, <xref ref-type="bibr" rid="B40">40</xref>]. This can result in decreased survival in <italic>RICTOR-</italic>amplified cases [<xref ref-type="bibr" rid="B41">41</xref>]. However, similar to our previous observation in small cell lung carcinoma [<xref ref-type="bibr" rid="B8">8</xref>], we did not detect a significant correlation between <italic>RICTOR</italic> amplification and unfavorable clinical outcomes in SCC of the lung. Nevertheless, Rictor membrane staining, which might be directly associated with Akt phosphorylation and thereby mTORC2 activity, did show slightly lower overall survival. These results might be clarified in a study with a larger sample size focused on this particular question.</p>
<p>In conclusion, our findings indicate that a significant proportion of lung SCCs, including PD-L1-negative cases, harbor <italic>RICTOR</italic> amplification. Despite the initial failures in early-phase clinical trials, one of the key messages of our study is that stratifying patients based on the presence of <italic>RICTOR</italic> amplification or Rictor overexpression may improve the results. With the advent of next-generation inhibitors that can selectively target mTORC2, the importance of this topic is emerging. Rictor membrane staining can predict <italic>RICTOR</italic> amplification as detected by FISH with high specificity and sensitivity; therefore, it can potentially be used as a surrogate marker to identify <italic>RICTOR</italic>-amplified lung SCCs. Analysis of lung SCCs by <italic>RICTOR</italic> FISH or Rictor IHC, especially in PD-L1-negative cases, can help select patients who may benefit from mTORC2 inhibitor therapy.</p>
</sec>
</body>
<back>
<sec sec-type="data-availability" id="s5">
<title>Data availability statement</title>
<p>The raw data supporting the conclusion of this article will be made available by the authors, without undue reservation.</p>
</sec>
<sec id="s6">
<title>Ethics statement</title>
<p>The study was reviewed and approved by the Mayo Clinic Institutional Review Board (ID: 18-001887) and the Institutional Ethical Review Board of Semmelweis University (SE KREB 216/2020). Written informed consent from the patients&#x2019; legal guardian/next of kin was not required to use archived tissue blocks in this study in accordance with the national legislation and the institutional requirements.</p>
</sec>
<sec id="s7">
<title>Author contributions</title>
<p>IK, EL, and AK collected the samples. IK, DS, TD, and DM performed the IHC reactions. IK and DS participated in performing FISH reactions and evaluation of the results. IK and JP evaluated the IHC reactions. IK, DS, and DM were responsible for the TCGA data analysis and statistical analysis. IK, AS, DS, and AK evaluated the results. IK and AK wrote the manuscript. AK supervised the project. All authors contributed to the article and approved the submitted version.</p>
</sec>
<sec sec-type="funding-information" id="s8">
<title>Funding</title>
<p>The study was supported by the grant of the Hungarian National Research, Development and Innovation Office (NKFI-FK-128404, AS; NTP-NFT&#xd6;-21-B-0179, IK) and the &#xda;NKP-23-4-II New National Excellence Program of the Ministry for Culture and Innovation from the Source of the National Research, Development and Innovation Fund (&#xda;NKP-23-4-II-SE-9, IK).</p>
</sec>
<sec sec-type="COI-statement" id="s9">
<title>Conflict of interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<ack>
<p>The authors are grateful to Tracy L. Majewicz (Department of Laboratory Medicine and Pathology, Mayo Clinic) and D&#xf3;ra Kapcz&#xe1;r (Department of Pathology and Experimental Cancer Research, Semmelweis University) for their technical assistance. The results were presented in part at the 2023 World Conference on Lung Cancer (Singapore).</p>
</ack>
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