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<front>
<journal-meta>
<journal-id journal-id-type="publisher-id">Pathol. Oncol. Res.</journal-id>
<journal-title>Pathology &#x26; Oncology Research</journal-title>
<abbrev-journal-title abbrev-type="pubmed">Pathol. Oncol. Res.</abbrev-journal-title>
<issn pub-type="epub">1532-2807</issn>
<publisher>
<publisher-name>Frontiers Media S.A.</publisher-name>
</publisher>
</journal-meta>
<article-meta>
<article-id pub-id-type="publisher-id">1610608</article-id>
<article-id pub-id-type="doi">10.3389/pore.2022.1610608</article-id>
<article-categories>
<subj-group subj-group-type="heading">
<subject>Pathology and Oncology Archive</subject>
<subj-group>
<subject>Original Research</subject>
</subj-group>
</subj-group>
</article-categories>
<title-group>
<article-title>Gene Expression Patterns of Osteopontin Isoforms and Integrins in Malignant Melanoma</article-title>
<alt-title alt-title-type="left-running-head">J&#xe1;mbor et al.</alt-title>
<alt-title alt-title-type="right-running-head">Osteopontin Isoforms Expression in Melanoma</alt-title>
</title-group>
<contrib-group>
<contrib contrib-type="author">
<name>
<surname>J&#xe1;mbor</surname>
<given-names>Krisztina</given-names>
</name>
<xref ref-type="aff" rid="aff1">
<sup>1</sup>
</xref>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1824524/overview"/>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Koroknai</surname>
<given-names>Vikt&#xf3;ria</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Kiss</surname>
<given-names>T&#xed;mea</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Sz&#xe1;sz</surname>
<given-names>Istv&#xe1;n</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
</contrib>
<contrib contrib-type="author">
<name>
<surname>Pik&#xf3;</surname>
<given-names>P&#xe9;ter</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<uri xlink:href="https://loop.frontiersin.org/people/604749/overview"/>
</contrib>
<contrib contrib-type="author" corresp="yes">
<name>
<surname>Bal&#xe1;zs</surname>
<given-names>Margit</given-names>
</name>
<xref ref-type="aff" rid="aff2">
<sup>2</sup>
</xref>
<xref ref-type="aff" rid="aff3">
<sup>3</sup>
</xref>
<xref ref-type="corresp" rid="c001">&#x2a;</xref>
<uri xlink:href="https://loop.frontiersin.org/people/1415644/overview"/>
</contrib>
</contrib-group>
<aff id="aff1">
<sup>1</sup>
<institution>Doctoral School of Health Sciences</institution>, <institution>University of Debrecen</institution>, <addr-line>Debrecen</addr-line>, <country>Hungary</country>
</aff>
<aff id="aff2">
<sup>2</sup>
<institution>Department of Public Health and Epidemiology</institution>, <institution>Faculty of Medicine</institution>, <institution>University of Debrecen</institution>, <addr-line>Debrecen</addr-line>, <country>Hungary</country>
</aff>
<aff id="aff3">
<sup>3</sup>
<institution>ELKH-DE Public Health Research Group</institution>, <institution>University of Debrecen</institution>, <addr-line>Debrecen</addr-line>, <country>Hungary</country>
</aff>
<author-notes>
<fn fn-type="edited-by">
<p>
<bold>Edited by:</bold> <ext-link ext-link-type="uri" xlink:href="https://loop.frontiersin.org/people/415488/overview">Andrea Lad&#xe1;nyi</ext-link>, National Institute of Oncology (NIO), Hungary</p>
</fn>
<corresp id="c001">&#x2a;Correspondence: Margit Bal&#xe1;zs, <email>balazs.margit@med.unideb.hu</email>
</corresp>
</author-notes>
<pub-date pub-type="epub">
<day>24</day>
<month>08</month>
<year>2022</year>
</pub-date>
<pub-date pub-type="collection">
<year>2022</year>
</pub-date>
<volume>28</volume>
<elocation-id>1610608</elocation-id>
<history>
<date date-type="received">
<day>19</day>
<month>05</month>
<year>2022</year>
</date>
<date date-type="accepted">
<day>11</day>
<month>07</month>
<year>2022</year>
</date>
</history>
<permissions>
<copyright-statement>Copyright &#xa9; 2022 J&#xe1;mbor, Koroknai, Kiss, Sz&#xe1;sz, Pik&#xf3; and Bal&#xe1;zs.</copyright-statement>
<copyright-year>2022</copyright-year>
<copyright-holder>J&#xe1;mbor, Koroknai, Kiss, Sz&#xe1;sz, Pik&#xf3; and Bal&#xe1;zs</copyright-holder>
<license xlink:href="http://creativecommons.org/licenses/by/4.0/">
<p>This is an open-access article distributed under the terms of the Creative Commons Attribution License (CC BY). The use, distribution or reproduction in other forums is permitted, provided the original author(s) and the copyright owner(s) are credited and that the original publication in this journal is cited, in accordance with accepted academic practice. No use, distribution or reproduction is permitted which does not comply with these terms.</p>
</license>
</permissions>
<abstract>
<p>Osteopontin (OPN) is a multifunctional glycoprotein that physiologically interacts with different types of integrins. It is considered to be a possible prognostic biomarker in certain tumor types; however, various splicing isoforms exist, which have not been investigated in melanoma. We aimed to define the relative expression pattern of five <italic>OPN</italic> isoforms and clarify the prognostic significance of the splice variants in melanoma. We also aimed to investigate the expression pattern of eight integrins in the same tumors. Gene expression analyses revealed that the relative expression of <italic>OPNa, OPNb</italic>, and <italic>OPNc</italic> is significantly higher in metastatic tumors compared to primary lesions (<italic>p</italic> &#x3c; 0.01), whereas the expression of <italic>OPN4</italic> and <italic>OPN5</italic> was low in both. The more aggressive nodular melanomas had higher expression levels compared to the superficial spreading subtype (<italic>p</italic> &#x2264; 0.05). The relative expression of the eight tested integrins was low, with only the expression of <italic>ITGB3</italic> being detectable in nodular melanoma (Median<sub>log2</sub> &#x3d; 1.274). A positive correlation was found between Breslow thickness and the expression of <italic>OPNc</italic> variant, whereby thicker tumors (&#x3e;4&#xa0;mm) had significantly higher expression (<italic>p</italic> &#x2264; 0.05). The Breslow thickness was negatively correlated with the expression of <italic>OPN4</italic>, and similarly with <italic>ITGA2</italic>. <italic>OPNc</italic> also exhibited significant positive correlation with the presence of metastasis. Our data show that high expression of <italic>OPNa</italic>, <italic>OPNb</italic>, and especially <italic>OPNc</italic> and low expression of <italic>OPN4</italic> and <italic>ITGA2</italic> are associated with an advanced stage of tumor progression and poor prognosis in melanoma.</p>
</abstract>
<kwd-group>
<kwd>gene expression</kwd>
<kwd>melanoma progression</kwd>
<kwd>osteopontin</kwd>
<kwd>osteopontin splice variants</kwd>
<kwd>integrins</kwd>
</kwd-group>
<contract-sponsor id="cn001">Nemzeti Kutat&#xe1;si, Fejleszt&#xe9;si &#xe9;s Innovaci&#xf3;s Alap<named-content content-type="fundref-id">10.13039/501100012550</named-content>
</contract-sponsor>
<contract-sponsor id="cn002">European Regional Development Fund<named-content content-type="fundref-id">10.13039/501100008530</named-content>
</contract-sponsor>
<contract-sponsor id="cn003">Magyar Tudom&#xe1;nyos Akad&#xe9;mia<named-content content-type="fundref-id">10.13039/501100003825</named-content>
</contract-sponsor>
</article-meta>
</front>
<body>
<sec id="s1">
<title>Introduction</title>
<p>Osteopontin (OPN or SPP1) is a multifunctional glycoprotein that physiologically interacts with different types of integrins. OPN is considered to be a possible prognostic biomarker in certain tumor types including malignant melanoma (<xref ref-type="bibr" rid="B1">1</xref>, <xref ref-type="bibr" rid="B2">2</xref>). Depending on the intracellular or extracellular localization, the expression of OPN is closely related to tumor proliferation, invasion, metastasis, and tumor microenvironment formation (<xref ref-type="bibr" rid="B3">3</xref>). These multifunctional biological roles are probably associated with the capacity for OPN to interact with different molecules, including cell surface receptors such as integrin and cluster of differentiation (CD44), intracellular signaling molecules, calcium, and heparin (<xref ref-type="bibr" rid="B4">4</xref>). OPN possesses three critical integrin binding sequences: the well conserved RGD domain (arginine&#x2013;glycine&#x2013;aspartic acid) that facilitated the interaction of OPN with &#x3b1;v integrins (especially &#x3b1;v&#x3b2;1, &#x3b1;v&#x3b2;3, and &#x3b1;v&#x3b2;5); the SVVYGLR (serine&#x2013;valine&#x2013;valine&#x2013;tyrosine&#x2013;glutamate&#x2013;leucine&#x2013;arginine) domain, which may bind to &#x3b1;4&#x3b2;1, &#x3b1;4&#x3b2;7, and &#x3b1;9&#x3b2;1 integrins; and the ELVTDFP sequence on the N-terminal, which can bind &#x3b1;4&#x3b2;1 (<xref ref-type="bibr" rid="B5">5</xref>). The OPN protein is a member of the SIBLING (small integrin-binding ligand N-linked glycoprotein) family, whose members interact with CD44 and integrins through the characteristic domain. OPN is a secreted protein; however, the existence of a nonsecreted intracellular form (iOPN) has also been reported, which can be localized in the cytoplasm and nucleus and has a slightly different function than secreted OPN (sOPN) (<xref ref-type="bibr" rid="B6">6</xref>&#x2013;<xref ref-type="bibr" rid="B8">8</xref>). OPN takes part in several normal physiological processes (vascularization, immune responses, inflammation, tissue remodeling, and cell adhesion) but also influences numerous aspects of tumorigenesis and metastasis (cell survival, proliferation, adhesion, migration, and invasion) (<xref ref-type="bibr" rid="B9">9</xref>, <xref ref-type="bibr" rid="B10">10</xref>). Through the connection with integrins and CD44, OPN influences the PI3K/AKT signaling pathway, resulting in NF-&#x3ba;B-mediated cell proliferation and survival. Moreover, the interaction of OPN with &#x3b1;v&#x3b2;3 integrin, in particular, affects the Ras/Raf/MEK/ERK signaling pathway and enhances the metastatic phenotype of several cancer cell types (<xref ref-type="bibr" rid="B11">11</xref>).</p>
<p>The primary transcript of the <italic>OPN</italic> gene is subject to alternative splicing, generating five splice isoforms: <italic>OPNa, OPNb, OPNc, OPN4</italic> and <italic>OPN5</italic> (<xref ref-type="bibr" rid="B3">3</xref>). The splicing variants differ in their gene structure: <italic>OPNa</italic> can be considered as the full-length isoform containing seven exons, <italic>OPNb</italic> lacks exon 5, and <italic>OPNc</italic> lacks exon 4. Both exon 4 and exon 5 are missing from <italic>OPN</italic> transcript variant 4, and, interestingly <italic>OPN5</italic>, has all seven exons supplemented with an extra exon derived from the retention of a portion from the intron 3 in the canonical isoform (<xref ref-type="bibr" rid="B12">12</xref>). Their translation results proteins called OPNa (314 amino acids), OPNb (300 amino acids), and OPNc (284 amino acids), which are widely studied and functionally well characterized, whereas OPN4 (273 amino acids) and OPN5 (327 amino acids) have only been recently identified (<xref ref-type="bibr" rid="B12">12</xref>&#x2013;<xref ref-type="bibr" rid="B14">14</xref>). The splice variants are abnormally expressed in different types of tumors (<xref ref-type="bibr" rid="B3">3</xref>, <xref ref-type="bibr" rid="B12">12</xref>). The high expression level of OPNc is indicative of adverse outcomes (nodal involvement, metastasis, and recurrence) in breast cancer, whereas the overexpression of the OPNa splice variant was observed in connection with the tumor growth of lung cancer cells, and OPNa was found to have a key role in thyroid cancer tumor progression (<xref ref-type="bibr" rid="B15">15</xref>, <xref ref-type="bibr" rid="B16">16</xref>).</p>
<p>Recently, OPN has received increasing attention, with several studies investigating its role as a potential biomarker in different cancers, including melanoma (<xref ref-type="bibr" rid="B17">17</xref>&#x2013;<xref ref-type="bibr" rid="B19">19</xref>). We previously observed, in our high-throughput microarray-based gene expression study, that ulcerated melanomas exhibit 6-fold higher expression of the <italic>SPP1/OPN</italic> gene compared to non-ulcerated melanomas (<xref ref-type="bibr" rid="B20">20</xref>). These results were also validated by qRT-PCR showing that elevated <italic>OPN</italic> mRNA expression is significantly associated with unfavorable prognostic parameters such as late stages (Clark stages IV&#x2013;V), elevated Breslow thickness (&#x2265;4.00&#xa0;mm), and ulcerated tumor surface (<xref ref-type="bibr" rid="B21">21</xref>). However, the expression patterns and the role of the <italic>OPN</italic> variants have not yet been described in human malignant melanoma. The expression of <italic>OPN</italic> splice variants in nonmelanoma skin cancers has only recently been investigated (<xref ref-type="bibr" rid="B22">22</xref>).</p>
<p>The aim of our study was to characterize the relative gene expression levels of <italic>OPN</italic> isoforms and clarify the prognostic significance of the five splice variants in primary and metastatic malignant melanoma. We also aimed to investigate the expression patterns of different integrins (<italic>ITGA2</italic>, <italic>ITGA3</italic>, <italic>ITGA5</italic>, <italic>ITGA6</italic>, <italic>ITGA9</italic>, <italic>ITGAV</italic>, <italic>ITGB1</italic>, and <italic>ITGB3</italic>) and assess their potential correlation with the clinicopathological parameters and osteopontin in the same tumors.</p>
</sec>
<sec sec-type="materials|methods" id="s2">
<title>Materials and Methods</title>
<sec id="s2-1">
<title>Melanoma Tissue Samples</title>
<p>Melanoma tissues were obtained from the Department of Dermatology at the University of Debrecen, Hungary. This study was approved by the Regional and Institutional Ethics Committee of the University of Debrecen Clinical Center [ETT TUKEB 26364-1/2012/EKU (449/PI/12)] and was carried out according to all relevant regulations. Written informed consent was obtained from the patients. Lesions were diagnosed on the basis of formalin-fixed paraffin-embedded tissue sections stained with hematoxylin&#x2013;eosin. A total of 31 primary and 10 metastatic melanoma samples were analyzed. The metastatic samples were derived from different patients other than the primary tumors. The follow up period of patients was 5&#xa0;years. The clinical&#x2013;pathological parameters of the melanoma tissue samples are summarized in <xref ref-type="table" rid="T1">Table 1</xref>.</p>
<table-wrap id="T1" position="float">
<label>TABLE 1</label>
<caption>
<p>Clinicopathological parameters of melanoma tissue samples.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="left">Variables</th>
<th align="center">n</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td colspan="2" align="left">Primary melanoma samples (<italic>n</italic> &#x3d; 31)</td>
</tr>
<tr>
<td align="left">SSM<xref ref-type="table-fn" rid="Tfn1">
<sup>a</sup>
</xref>
</td>
<td align="char" char=".">21</td>
</tr>
<tr>
<td align="left">NM<xref ref-type="table-fn" rid="Tfn2">
<sup>b</sup>
</xref>
</td>
<td align="char" char=".">10</td>
</tr>
<tr>
<td colspan="2" align="left">Gender</td>
</tr>
<tr>
<td align="left">Male</td>
<td align="char" char=".">16</td>
</tr>
<tr>
<td align="left">Female</td>
<td align="char" char=".">15</td>
</tr>
<tr>
<td colspan="2" align="left">Age (years)</td>
</tr>
<tr>
<td align="left">&#xa0;20&#x2013;50</td>
<td align="char" char=".">7</td>
</tr>
<tr>
<td align="left">&#xa0;&#x3e;50</td>
<td align="char" char=".">24</td>
</tr>
<tr>
<td colspan="2" align="left">Breslow thickness (mm)<xref ref-type="table-fn" rid="Tfn3">
<sup>c</sup>
</xref>
</td>
</tr>
<tr>
<td align="left">&#xa0;&#x3c;2.00</td>
<td align="char" char=".">8</td>
</tr>
<tr>
<td align="left">&#xa0;2.01-4.00</td>
<td align="char" char=".">14</td>
</tr>
<tr>
<td align="left">&#xa0;&#x3e;4.00</td>
<td align="char" char=".">9</td>
</tr>
<tr>
<td colspan="2" align="left">Clark&#x2019;s level</td>
</tr>
<tr>
<td align="left">II&#x2013;III</td>
<td align="char" char=".">13</td>
</tr>
<tr>
<td align="left">IV&#x2013;V</td>
<td align="char" char=".">17</td>
</tr>
<tr>
<td align="left">n.d.</td>
<td align="char" char=".">1</td>
</tr>
<tr>
<td colspan="2" align="left">Ulceration</td>
</tr>
<tr>
<td align="left">Absent</td>
<td align="char" char=".">18</td>
</tr>
<tr>
<td align="left">Present</td>
<td align="char" char=".">13</td>
</tr>
<tr>
<td colspan="2" align="left">Localisation</td>
</tr>
<tr>
<td align="left">Trunk</td>
<td align="char" char=".">15</td>
</tr>
<tr>
<td align="left">Extremities</td>
<td align="char" char=".">13</td>
</tr>
<tr>
<td align="left">Head</td>
<td align="char" char=".">3</td>
</tr>
<tr>
<td colspan="2" align="left">Metastasis formation<xref ref-type="table-fn" rid="Tfn4">
<sup>d</sup>
</xref>
</td>
</tr>
<tr>
<td align="left">Non-metastatic</td>
<td align="char" char=".">13</td>
</tr>
<tr>
<td align="left">Metastatic</td>
<td align="char" char=".">18</td>
</tr>
<tr>
<td colspan="2" align="left">Melanoma metastases (<italic>n</italic> &#x3d; 10)</td>
</tr>
<tr>
<td align="left">Male</td>
<td align="char" char=".">7</td>
</tr>
<tr>
<td align="left">Female</td>
<td align="char" char=".">3</td>
</tr>
<tr>
<td colspan="2" align="left">Age (years)</td>
</tr>
<tr>
<td align="left">20&#x2013;50</td>
<td align="char" char=".">2</td>
</tr>
<tr>
<td align="left">&#x3e;50</td>
<td align="char" char=".">8</td>
</tr>
<tr>
<td colspan="2" align="left">Localization</td>
</tr>
<tr>
<td align="left">Regional lymph node</td>
<td align="char" char=".">4</td>
</tr>
<tr>
<td align="left">Regional (sub)cutaneous</td>
<td align="char" char=".">3</td>
</tr>
<tr>
<td align="left">Distant</td>
<td align="char" char=".">3</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn id="Tfn1">
<label>a</label>
<p>SSM, superficial spreading melanoma.</p>
</fn>
<fn id="Tfn2">
<label>b</label>
<p>NM, nodular melanoma.</p>
</fn>
<fn id="Tfn3">
<label>c</label>
<p>Thickness categories based on the current melanoma staging system.</p>
</fn>
<fn id="Tfn4">
<label>d</label>
<p>Patients with follow-up periods of 5&#xa0;years were included into the study.</p>
</fn>
</table-wrap-foot>
</table-wrap>
<p>Before RNA isolation all melanoma tissue samples were examined for the content of tumor cells and the adjacent normal tissues were removed to ensure that normal cell contamination will not influence the results. The tumor cell content of tissues analysed were &#x2265;80% for each sample. The total RNA was isolated from frozen melanoma tissues using the RNeasy Plus Mini Kit (Qiagen GmbH, Hilden, Germany) according to the manufacturer&#x2019;s protocol. The concentration and the quality of the RNA was determined using NanoDrop ND-1000 UV&#x2013;vis Spectrophotometer V3.3.0 (NanoDrop Technologies, Wilmington, DE, United States). The absorbance ratios of 260&#xa0;nm/280&#xa0;nm of all RNA samples were 1.8 or above and the 260&#xa0;nm/230&#xa0;nm ratios were 2.0 or above. cDNA synthesis of 600&#xa0;ng total RNA was performed using a High Capacity cDNA Reverse Transcription Kit (Applied Biosystems, Foster City, CA, United States) according to the manufacturer&#x2019;s protocol.</p>
</sec>
<sec id="s2-2">
<title>qRT-PCR</title>
<p>Gene expression levels of OPN splice variants (<italic>OPNa</italic>, <italic>OPNb</italic>, <italic>OPNc</italic>, <italic>OPN4</italic>, and <italic>OPN5</italic>) and integrins (<italic>ITGA2</italic>, <italic>ITGA3</italic>, <italic>ITGA5</italic>, <italic>ITGA6</italic>, <italic>ITGA9</italic>, <italic>ITGAV</italic>, <italic>ITGB1</italic>, and <italic>ITGB3</italic>) were determined by real-time PCR using Xceed qPCR Probe 2x Mix Hi-ROX (Institute of Applied Biotechnologies, Prague, Czech Republic) and a LightCycler&#xae; 480 Instrument II (Roche Diagnostics Nederland BV, Almere, Netherlands). Each reaction contained 15&#xa0;ng cDNA and was run on the LightCycler&#xae; 480 instrument. Conditions for real-time PCR included the following steps: preactivation: 95&#xb0;C 1&#xa0;min; followed by 45 cycles of the following program: 95&#xb0;C 5&#xa0;s (denaturation), annealing 55&#x2013;62&#xb0;C for 10&#xa0;s (specific annealing temperature and the sequence of each primer can be found in <xref ref-type="table" rid="T2">Table 2</xref>), extension 72&#xb0;C 15&#xa0;s, cooling at 40&#xb0;C for 30&#xa0;s; finished by melting curve analysis. Primers were obtained from Life Technologies. To analyze qRT-PCR data, cyclophilin A (CYPA) was used as a reference gene and the Livak method (2<sup>&#x2212;&#x394;&#x394;CT</sup> equation) was applied (<xref ref-type="bibr" rid="B23">23</xref>). Pooled nevi (<italic>n</italic> &#x3d; 8) was used as a normalization control for the melanoma tissue samples. Statistical analysis was performed using IBM SPSS (Statistical Package for Social Sciences) Statistics for Windows, version 25.0 (IBM Corp., Armonk, NY, United States).</p>
<table-wrap id="T2" position="float">
<label>TABLE 2</label>
<caption>
<p>Primer sequences of OPN splice variants, reference gene and integrins used for qRT-PCR.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="left">Gene</th>
<th align="center">Nucleotide sequence</th>
<th align="center">T annealing (&#xb0;C)</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">OPNa F</td>
<td align="left">ATC&#x200b;TCC&#x200b;TAG&#x200b;CCC&#x200b;CAC&#x200b;AGA&#x200b;AT</td>
<td rowspan="2" align="char" char=".">55</td>
</tr>
<tr>
<td align="left">OPNa R</td>
<td align="left">CAT&#x200b;CAG&#x200b;ACT&#x200b;GGT&#x200b;GAG&#x200b;AAT&#x200b;CAT&#x200b;C</td>
</tr>
<tr>
<td align="left">OPNb F</td>
<td align="left">ATC&#x200b;TCC&#x200b;TAG&#x200b;CCC&#x200b;CAG&#x200b;AGA&#x200b;C</td>
<td rowspan="2" align="char" char=".">55</td>
</tr>
<tr>
<td align="left">OPNb R</td>
<td align="left">AAA&#x200b;ATC&#x200b;AGT&#x200b;GAC&#x200b;CAG&#x200b;TTC&#x200b;ATC&#x200b;AG</td>
</tr>
<tr>
<td align="left">OPNc F</td>
<td align="left">TGA&#x200b;GGA&#x200b;AAA&#x200b;GCA&#x200b;GAA&#x200b;TGC&#x200b;TG</td>
<td rowspan="2" align="char" char=".">57</td>
</tr>
<tr>
<td align="left">OPNc R</td>
<td align="left">GTC&#x200b;AAT&#x200b;GGA&#x200b;GTC&#x200b;CTG&#x200b;GCT&#x200b;GT</td>
</tr>
<tr>
<td align="left">OPN4 F</td>
<td align="left">GGAAAAGCAGACCCTTCC</td>
<td rowspan="2" align="char" char=".">55</td>
</tr>
<tr>
<td align="left">OPN4 R</td>
<td align="left">CAT&#x200b;ATG&#x200b;TGT&#x200b;CTA&#x200b;CTG&#x200b;TGG&#x200b;GG</td>
</tr>
<tr>
<td align="left">OPN5 F</td>
<td align="left">AAC&#x200b;AAA&#x200b;TGG&#x200b;GCA&#x200b;TTG&#x200b;TCC&#x200b;CC</td>
<td rowspan="2" align="char" char=".">59</td>
</tr>
<tr>
<td align="left">OPN5 R</td>
<td align="left">GCA&#x200b;GTC&#x200b;TAA&#x200b;TTG&#x200b;CAG&#x200b;TGA&#x200b;CCC</td>
</tr>
<tr>
<td align="left">CYPA F</td>
<td align="left">CTC&#x200b;GAA&#x200b;TAA&#x200b;GTT&#x200b;TGA&#x200b;CTT&#x200b;G</td>
<td rowspan="2" align="char" char=".">60</td>
</tr>
<tr>
<td align="left">CYPA R</td>
<td align="left">CTA&#x200b;GGC&#x200b;ATG&#x200b;GGA&#x200b;GGG&#x200b;AAC&#x200b;A</td>
</tr>
<tr>
<td align="left">ITGA2 F</td>
<td align="left">CAC&#x200b;AAA&#x200b;GAC&#x200b;ACA&#x200b;GGT&#x200b;GGG&#x200b;GT</td>
<td rowspan="2" align="char" char=".">62</td>
</tr>
<tr>
<td align="left">ITGA2 R</td>
<td align="left">TGG&#x200b;GAT&#x200b;GTC&#x200b;TGG&#x200b;GAT&#x200b;GTT&#x200b;GC</td>
</tr>
<tr>
<td align="left">ITGA3 F</td>
<td align="left">GCC&#x200b;CAC&#x200b;AAG&#x200b;GAT&#x200b;GAC&#x200b;TGT&#x200b;G</td>
<td rowspan="2" align="char" char=".">60</td>
</tr>
<tr>
<td align="left">ITGA3 R</td>
<td align="left">GCT&#x200b;GGT&#x200b;CTT&#x200b;CTG&#x200b;ACC&#x200b;CTG&#x200b;A</td>
</tr>
<tr>
<td align="left">ITGA5 F</td>
<td align="left">GAG&#x200b;CAA&#x200b;GAG&#x200b;CCG&#x200b;GAT&#x200b;AGA&#x200b;GG</td>
<td rowspan="2" align="char" char=".">55</td>
</tr>
<tr>
<td align="left">ITGA5 R</td>
<td align="left">CTG&#x200b;CTC&#x200b;CCC&#x200b;AAA&#x200b;CAC&#x200b;TTC&#x200b;CA</td>
</tr>
<tr>
<td align="left">ITGA6 F</td>
<td align="left">AAA&#x200b;CTG&#x200b;CGT&#x200b;CCC&#x200b;ATT&#x200b;CCC&#x200b;A</td>
<td rowspan="2" align="char" char=".">60</td>
</tr>
<tr>
<td align="left">ITGA6 R</td>
<td align="left">TGT&#x200b;CGT&#x200b;CTC&#x200b;CAC&#x200b;ATC&#x200b;CCT&#x200b;C</td>
</tr>
<tr>
<td align="left">ITGA9 F</td>
<td align="left">CGG&#x200b;TAC&#x200b;ACC&#x200b;TAC&#x200b;CTG&#x200b;GGC&#x200b;TA</td>
<td rowspan="2" align="char" char=".">58</td>
</tr>
<tr>
<td align="left">ITGA9 R</td>
<td align="left">AAA&#x200b;CCT&#x200b;TGC&#x200b;CGA&#x200b;TGC&#x200b;CTT&#x200b;TG</td>
</tr>
<tr>
<td align="left">ITGAV F</td>
<td align="left">AAT&#x200b;GTT&#x200b;GTG&#x200b;CCG&#x200b;GAT&#x200b;GTT&#x200b;TCT&#x200b;T</td>
<td rowspan="2" align="char" char=".">58</td>
</tr>
<tr>
<td align="left">ITGAV R</td>
<td align="left">CGG&#x200b;GTA&#x200b;GAA&#x200b;GAC&#x200b;CAG&#x200b;TCA&#x200b;CAT</td>
</tr>
<tr>
<td align="left">ITGB1 F</td>
<td align="left">CCA&#x200b;AAT&#x200b;GGG&#x200b;ACA&#x200b;CGG&#x200b;GTG&#x200b;AA</td>
<td rowspan="2" align="char" char=".">58</td>
</tr>
<tr>
<td align="left">ITGB1 R</td>
<td align="left">GTG&#x200b;TTG&#x200b;TGG&#x200b;GAT&#x200b;TTG&#x200b;CAC&#x200b;GG</td>
</tr>
<tr>
<td align="left">ITGB3 F</td>
<td align="left">CCT&#x200b;CAT&#x200b;CAC&#x200b;CAT&#x200b;CCA&#x200b;CGA&#x200b;CC</td>
<td rowspan="2" align="char" char=".">62</td>
</tr>
<tr>
<td align="left">ITGB3 R</td>
<td align="left">GTT&#x200b;GTT&#x200b;GGC&#x200b;TGT&#x200b;GTC&#x200b;CCA&#x200b;TT</td>
</tr>
</tbody>
</table>
</table-wrap>
</sec>
<sec id="s2-3">
<title>Statistical Analysis</title>
<p>The expression data were analyzed in the melanoma tissue samples classified by histological tissue subtype, Breslow thickness of the primary tumors, and Clark staging. The following Breslow thickness groups were applied based on the current melanoma staging system: tissues from tumors with less than 2&#xa0;mm thickness (<italic>n</italic> &#x3d; 8), between 2 and 4&#xa0;mm (<italic>n</italic> &#x3d; 14), and tumors with more than 4&#xa0;mm thickness (<italic>n</italic> &#x3d; 9) (<xref ref-type="bibr" rid="B24">24</xref>). The Kruskal&#x2013;Wallis H test was used to determine the significant differences of expression data between more than two groups. A two-sided Mann&#x2013;Whitney <italic>U</italic> test was applied to reveal significant differences between the expression data of two certain tissue sample groups. Stepwise regression analysis was applied to select those OPN variants and integrins whose expression demonstrate a relationship with the Breslow thickness (as a continuous variant) independently of each other and without collinearity. Linear regression (adjusted for age and sex) was carried out to determine which of these variants were significantly associated with Breslow thickness. Primary melanomas were also grouped according to whether the patient was diagnosed with metastasis or did not develop metastasis during the follow-up (5&#xa0;years) period. The expression data were analyzed by logistic regression. <italic>p</italic> &#x3c; 0.05 was considered to indicate statistically significant differences in each case.</p>
</sec>
</sec>
<sec sec-type="results" id="s3">
<title>Results</title>
<sec id="s3-1">
<title>Relative Gene Expression of OPN Splicing Isoforms and Their Comparison in Melanoma Tissue Subtypes</title>
<p>The median gene expression values determined for <italic>OPN</italic> splicing isoforms in SSM, NM, and melanoma metastasis tissue samples are summarized in <xref ref-type="sec" rid="s10">Supplementary Table S1</xref>. In <xref ref-type="fig" rid="F1">Figure 1</xref>, boxplots show the relative expression of the five splice variants (<italic>OPNa</italic>, <italic>OPNb</italic>, <italic>OPNc</italic>, <italic>OPN4</italic>, and <italic>OPN5</italic>) in superficial spreading melanomas, nodular melanomas, and melanoma metastasis. The highest expression of <italic>OPNa</italic> (median &#x3d; 3.925), <italic>OPNb</italic> (median &#x3d; 3.043), and <italic>OPNc</italic> (median &#x3d; 3.060) was detected in melanoma metastasis, which significantly differed when compared to the nodular and superficial tissue samples (<italic>p</italic> &#x2264; 0.05). The relative expression levels of <italic>OPN4</italic> and <italic>OPN5</italic> were very low in all pathological subtypes, and they were downregulated relative to nevi (except in the case of <italic>OPN4</italic> in metastasis). A significant difference in the expression of <italic>OPN5</italic> was observed only between nodular and melanoma metastasis tissues (<italic>p</italic> &#x2264; 0.05).</p>
<fig id="F1" position="float">
<label>FIGURE 1</label>
<caption>
<p>Relative mRNA expression levels of osteopontin isoforms (<italic>OPNa</italic>, <italic>OPNb</italic>, <italic>OPNc</italic>, <italic>OPN4</italic>, and <italic>OPN5</italic>) in distinct pathological subgroups of malignant melanoma: superficial spreading melanoma (SSM, <italic>n</italic> &#x3d; 21), nodular melanoma (NM, <italic>n</italic> &#x3d; 10), and melanoma metastasis (Meta, <italic>n</italic> &#x3d; 10) tissue samples. Asterisks indicate significant differences: &#x2a;<italic>p</italic> &#x3c; 0.05; &#x2a;&#x2a;<italic>p</italic> &#x3c; 0.01; &#x2a;&#x2a;&#x2a;<italic>p</italic> &#x3c; 0.001.</p>
</caption>
<graphic xlink:href="pore-28-1610608-g001.tif"/>
</fig>
</sec>
<sec id="s3-2">
<title>Comparison of the Relative Gene Expression of OPN Splice Variants in Tissues Classified by Breslow Thickness and Clark Stages in Primary Tumor Samples</title>
<p>Investigating the relative gene expression of the OPN isoforms in the three thickness groups, the Kruskal&#x2013;Wallis H test showed significant differences in the relative expression of <italic>OPNc</italic> between the groups (&#x3c;2&#xa0;mm (median &#x3d; &#x2212;1.24), 2&#x2013;4&#xa0;mm (median &#x3d; &#x2212;0.57), and &#x3e;4&#xa0;mm (median &#x3d; 1.40); <italic>p</italic> &#x3d; 0.008). When comparing two groups with each other, tissues samples with &#x3e;4&#xa0;mm Breslow thickness showed significantly higher relative expression of <italic>OPNc</italic> than samples with 2&#x2013;4&#xa0;mm thickness (Mann&#x2013;Whitney <italic>U</italic> test <italic>p</italic> &#x3d; 0.023), and tissues with less than 2&#xa0;mm exhibited the lowest expression (<xref ref-type="fig" rid="F2">Figure 2</xref>). This trend of elevation can also be observed in the expression of <italic>OPNa</italic> and <italic>OPNb</italic> variants as the thickness increases; however, these differences were not considered significant. The mRNA expression of <italic>OPN4</italic> and <italic>OPN5</italic> did not show significant association with Breslow thickness. <xref ref-type="sec" rid="s10">Supplementary Table S2</xref> summarizes the median values of each group. We did not find significant association between the relative gene expression levels of the different OPN splice variants and Clark stages.</p>
<fig id="F2" position="float">
<label>FIGURE 2</label>
<caption>
<p>Comparison of the relative mRNA expression of osteopontin isoforms (<italic>OPNa</italic>, <italic>OPNb</italic>, <italic>OPNc</italic>, <italic>OPN4</italic>, and <italic>OPN5</italic>) in malignant melanoma tissue samples from tumors with different Breslow thicknesses: &#x3c; 2&#xa0;mm (<italic>n</italic> &#x3d; 8), 2&#x2013;4&#xa0;mm (<italic>n</italic> &#x3d; 14), and &#x3e;4&#xa0;mm (<italic>n</italic> &#x3d; 9). Significant differences (&#x2a;<italic>p</italic> &#x2264; 0.05; &#x2a;&#x2a;<italic>p</italic> &#x2264; 0.01; &#x2a;&#x2a;&#x2a;<italic>p</italic> &#x2264; 0.001 Mann&#x2013;Whitney test, Kruskal&#x2013;Wallis test) are indicated by asterisks.</p>
</caption>
<graphic xlink:href="pore-28-1610608-g002.tif"/>
</fig>
</sec>
<sec id="s3-3">
<title>Relative Gene Expression of Integrins and Their Comparison in Pathological Subgroups of Melanoma Tissues</title>
<p>Boxplots of the expression levels of the eight integrin genes in subgroups of melanoma tissue samples are presented in <xref ref-type="fig" rid="F3">Figure 3</xref>. Excluding <italic>ITGA2</italic>, seven integrins exhibited no significant differences in gene expression between different tissue subtypes. A significant difference in the gene expression level of <italic>ITGA2</italic> was found in SSM tissue samples (median &#x3d; &#x2212;1.622) compared with NM (median &#x3d; &#x2212;3.630) and melanoma metastasis (median &#x3d; &#x2212;4.807) tissue samples. (Kruskal&#x2013;Wallis H test, <italic>p</italic> &#x3d; 0.001; Mann&#x2013;Whitney <italic>U</italic> test, <italic>p</italic> &#x3d; 0.002). However, the expression of the eight tested integrin genes was, overall, extremely low (with negative values for medians indicating downregulation) except <italic>ITGB3</italic>, which showed measurable values without significant differences in expression (median values: M<sub>SSM</sub> &#x3d; 0.168, M<sub>NM</sub> &#x3d; 1.274, and M<sub>Metastasis</sub> &#x3d; &#x2212;0.863). <xref ref-type="sec" rid="s10">Supplementary Table S3</xref> summarizes the median values of relative gene expression data in each melanoma tissue subgroup.</p>
<fig id="F3" position="float">
<label>FIGURE 3</label>
<caption>
<p>Relative mRNA expression levels of integrin (<italic>ITGA2</italic>, <italic>ITGA3</italic>, <italic>ITGA5</italic>, <italic>ITGA6</italic>, <italic>ITGA9</italic>, <italic>ITGAV</italic>, <italic>ITGB1</italic>, and <italic>ITGB3</italic>) genes in distinct pathological subgroups of malignant melanoma: superficial spreading melanoma (SSM, <italic>n</italic> &#x3d; 20), nodular melanoma (NM, <italic>n</italic> &#x3d; 9), and melanoma metastasis (Meta, <italic>n</italic> &#x3d; 10) tissue samples. Asterisks indicate significant differences (&#x2a;<italic>p</italic> &#x3c; 0.05; &#x2a;&#x2a;<italic>p</italic> &#x3c; 0.01; &#x2a;&#x2a;&#x2a;<italic>p</italic> &#x3c; 0.001).</p>
</caption>
<graphic xlink:href="pore-28-1610608-g003.tif"/>
</fig>
</sec>
<sec id="s3-4">
<title>Relationship Between the Relative Gene Expression of Integrins and the Clinicopathological Data (Breslow Thickness and Clark Staging) of Primary Melanoma Tissues</title>
<p>In the cases of <italic>ITGA2</italic>, <italic>ITGA6</italic>, <italic>ITGA9</italic>, <italic>ITGAV</italic>, <italic>ITGB1</italic>, and <italic>ITGB3</italic>, significant differences were observed between the three Breslow thickness groups (<xref ref-type="fig" rid="F4">Figure 4</xref>, Kruskal&#x2013;Wallis test, <italic>p</italic> &#x3c; 0.05). Tumor samples with more than 4&#xa0;mm thickness exhibited significantly lower relative expression levels of <italic>ITGA3, ITGA6, ITGA9, ITGAV</italic>, and <italic>ITGB1</italic> than samples belonging to the 2&#x2013;4&#xa0;mm Breslow thickness category (Mann&#x2013;Whitney test, <italic>p</italic> &#x3c; 0.05). <italic>ITGB3</italic> exhibited significantly higher relative expression in tissues with 2&#x2013;4&#xa0;mm and &#x3e;4&#xa0;mm Breslow thickness, and was the highest in the group with 2&#x2013;4&#xa0;mm thickness. Median values can be found in <xref ref-type="sec" rid="s10">Supplementary Table S4</xref>.</p>
<fig id="F4" position="float">
<label>FIGURE 4</label>
<caption>
<p>Comparison of relative mRNA expression levels of integrin (<italic>ITGA2</italic>, <italic>ITGA3</italic>, <italic>ITGA5</italic>, <italic>ITGA6</italic>, <italic>ITGA9</italic>, <italic>ITGAV</italic>, <italic>ITGB1</italic>, and <italic>ITGB3</italic>) genes in melanoma tissue samples grouped by distinct Breslow thickness: &#x3c;2&#xa0;mm (<italic>n</italic> &#x3d; 8), 2&#x2013;4&#xa0;mm (<italic>n</italic> &#x3d; 12), and &#x3e;4&#xa0;mm (<italic>n</italic> &#x3d; 9). Significant differences (&#x2a;<italic>p</italic> &#x2264; 0.05; &#x2a;&#x2a;<italic>p</italic> &#x2264; 0.01; &#x2a;&#x2a;&#x2a;<italic>p</italic> &#x2264; 0.001 Mann&#x2013;Whitney test, Kruskal&#x2013;Wallis test) are indicated by asterisks.</p>
</caption>
<graphic xlink:href="pore-28-1610608-g004.tif"/>
</fig>
<p>Tissue samples of primary tumors were also differentiated according to Clark stages: earlier stages (II&#x2013;III, <italic>n</italic> &#x3d; 13), and later stages (IV&#x2013;V, <italic>n</italic> &#x3d; 17) <xref ref-type="sec" rid="s10">Supplementary Figure S1</xref> shows that a significant difference was observed only in the case of <italic>ITGA2</italic>: tissues with a later Clark stage (IV&#x2013;V) exhibited lower mRNA expression (mean &#x3d; &#x2212;1.35) than samples with earlier stage (II&#x2013;III) (mean &#x3d; &#x2212;3.57) (Mann&#x2013;Whitney <italic>U</italic> test, <italic>p</italic> &#x3c; 0.005).</p>
</sec>
<sec id="s3-5">
<title>Correlation of the Relative Expression of Osteopontin Variants and Integrins</title>
<p>The gene expression data of OPN variants and integrins analyzed with Spearman&#x2019;s correlation revealed positive correlations of expression between <italic>OPN4</italic> and most of the integrins: <italic>ITGB3</italic> (<italic>r</italic> &#x3d; 0.604), <italic>ITGA5</italic> (<italic>r</italic> &#x3d; 0.530), <italic>ITGA9</italic> (<italic>r</italic> &#x3d; 0.530), <italic>ITGAV</italic> (<italic>r</italic> &#x3d; 0.520), <italic>ITGB1</italic> (<italic>r</italic> &#x3d; 0.590), <italic>ITGA3</italic> (<italic>r</italic> &#x3d; 0.585), and <italic>ITGA6</italic> (<italic>r</italic> &#x3d; 0.500) (<italic>p</italic> &#x3c; 0.01). Positive correlations of expression were also observed between <italic>OPN5</italic> and <italic>ITGA2</italic> (<italic>r</italic> &#x3d; 0.447), <italic>ITGAV</italic> (<italic>r</italic> &#x3d; 0.504) (<italic>p</italic> &#x3c; 0.01), <italic>ITGB1</italic> (<italic>r</italic> &#x3d; 0.348), <italic>ITGA3</italic> (<italic>r</italic> &#x3d; 0.361), and <italic>ITGA6</italic> (<italic>r</italic> &#x3d; 0.406) (<italic>p</italic> &#x3c; 0.05). Negative correlations of expression were observed between <italic>ITGA2</italic> and <italic>OPNa</italic> (<italic>r</italic> &#x3d; &#x2212;0.480), <italic>OPNb</italic> (<italic>r</italic> &#x3d; &#x2212;0.416), and <italic>OPNc</italic> (r &#x3d; &#x2212;0.540) (<italic>p</italic> &#x3c; 0.01) and between <italic>ITGA6</italic> and <italic>OPNc</italic> (<italic>r</italic> &#x3d; &#x2212;0.392) (<italic>p</italic> &#x3c; 0.05). A table with the results of the Spearman&#x2019;s rho correlation can be found in <xref ref-type="sec" rid="s10">Supplementary Table S5</xref> and graphs of significantly correlating variables in <xref ref-type="sec" rid="s10">Supplementary Figures S2&#x2013;S5</xref>.</p>
</sec>
<sec id="s3-6">
<title>Correlation of OPN Variants and ITGs With Breslow Thickness (As a Continuous Outcome in mm) Based on the Results of Stepwise and Linear Regression Analysis</title>
<p>As a result of stepwise regression analysis, the expression of two osteopontin variants, <italic>OPNc</italic> and <italic>OPN4</italic>, and two integrins, <italic>ITGA5</italic> and <italic>ITGA2</italic>, was determined to be linked with Breslow thickness independently. The linear regression analysis of these variants revealed that their relationship with Breslow thickness was significant; however, while the beta value of <italic>OPNc</italic> was 0.217, indicating a positive correlation, the negative beta value of <italic>OPN4</italic>, &#x2212;0.762, indicates a negative correlation with Breslow thickness. In the case of integrins, <italic>ITGA2</italic> had a significant negative correlation (<italic>&#x3b2;</italic> value &#x3d; &#x2212;23.061), but <italic>ITGA5</italic> showed a significant positive correlation (<italic>&#x3b2;</italic> value &#x3d; 2.697) with Breslow thickness. A 0.1 unit (2<sup>&#x2212;&#x394;&#x394;Ct</sup>) decrease in <italic>ITGA2</italic> expression is associated with 2.3&#xa0;mm increase of Breslow thickness. See <xref ref-type="table" rid="T3">Table 3</xref> for more details.</p>
<table-wrap id="T3" position="float">
<label>TABLE 3</label>
<caption>
<p>Linear regression analyses of the gene expression of OPN splice variants and integrins with the Breslow thickness of primary melanomas.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="left">Osteopontin isoforms</th>
<th align="center">&#x3b2;</th>
<th align="center">95% CI</th>
<th align="center">p-value</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">OPNa</td>
<td align="center">0.115</td>
<td align="center">&#x2212;0.011&#x2013;0.242</td>
<td align="center">0.071</td>
</tr>
<tr>
<td align="left">OPNb</td>
<td align="center">0.172</td>
<td align="center">&#x2212;0.069&#x2013;0.414</td>
<td align="center">0.155</td>
</tr>
<tr>
<td align="left">OPNc</td>
<td align="center">
<bold>0.217</bold>
</td>
<td align="center">
<bold>0.112&#x2013;0.322</bold>
</td>
<td align="center">
<bold>&#x3c;0.001</bold>
</td>
</tr>
<tr>
<td align="left">OPN4</td>
<td align="center">&#x2212;<bold>0.762</bold>
</td>
<td align="center">&#x2212;<bold>1.343&#x2013;(</bold>&#x2212;<bold>0.181)</bold>
</td>
<td align="center">
<bold>0.012</bold>
</td>
</tr>
<tr>
<td align="left">OPN5</td>
<td align="center">&#x2212;3.030</td>
<td align="center">&#x2212;8.237&#x2013;2,176</td>
<td align="center">0.242</td>
</tr>
<tr>
<td align="left">
<bold>Integrins</bold>
</td>
<td align="center">
<bold>&#x3b2;</bold>
</td>
<td align="center">
<bold>95% CI</bold>
</td>
<td align="center">
<bold>p-value</bold>
</td>
</tr>
<tr>
<td align="left">ITGA2</td>
<td align="center">&#x2212;<bold>23.061</bold>
</td>
<td align="center">&#x2212;<bold>30.158&#x2013;(</bold>&#x2212;<bold>15.964)</bold>
</td>
<td align="center">
<bold>&#x3c;0.001</bold>
</td>
</tr>
<tr>
<td align="left">ITGA3</td>
<td align="center">&#x2212;2.338</td>
<td align="center">&#x2212;6.861&#x2013;2.185</td>
<td align="center">0.296</td>
</tr>
<tr>
<td align="left">ITGA5</td>
<td align="center">
<bold>2.697</bold>
</td>
<td align="center">
<bold>0.956&#x2013;4.438</bold>
</td>
<td align="center">
<bold>0.004</bold>
</td>
</tr>
<tr>
<td align="left">ITGA6</td>
<td align="center">&#x2212;9.079</td>
<td align="center">&#x2212;20.317&#x2013;2.158</td>
<td align="center">0.108</td>
</tr>
<tr>
<td align="left">ITGA9</td>
<td align="center">&#x2212;14.345</td>
<td align="center">&#x2212;41.876&#x2013;13.185</td>
<td align="center">0.292</td>
</tr>
<tr>
<td align="left">ITGAV</td>
<td align="center">&#x2212;15.465</td>
<td align="center">&#x2212;30.958&#x2013;0.046</td>
<td align="center">0.051</td>
</tr>
<tr>
<td align="left">ITGB1</td>
<td align="center">&#x2212;5.086</td>
<td align="center">&#x2212;13.612&#x2013;3.440</td>
<td align="center">0.229</td>
</tr>
<tr>
<td align="left">ITGB3</td>
<td align="center">0.023</td>
<td align="center">&#x2212;0.099&#x2013;0.146</td>
<td align="center">0.7</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>&#x3b2; is a regression coefficients which indicates the direction and size of effect between variables. CI: confidence interval. Bold values indicates significant associations.</p>
</fn>
</table-wrap-foot>
</table-wrap>
</sec>
<sec id="s3-7">
<title>Logistic Regression: Relative Expression of OPN Variants and Presence of Metastasis</title>
<p>The results of logistic regression show that <italic>OPNc</italic> expression (log2 transformed data) is significantly positively correlated with the presence of metastasis (OR &#x3d; 1.931, <italic>p</italic> &#x3d; 0.044) (<xref ref-type="table" rid="T4">Table 4</xref>), whereas <italic>OPN4</italic> was not significantly correlated (OR &#x3d; 0.962, <italic>p</italic> &#x3d; 0.773) with the presence of metastasis<bold>
<italic>.</italic>
</bold> Integrins did not show significant correlation with the presence of metastasis.</p>
<table-wrap id="T4" position="float">
<label>TABLE 4</label>
<caption>
<p>Logistic regression analyses of the gene expressions OPN splice variants and integrins in relation of metastasis formation of malignant melanoma.</p>
</caption>
<table>
<thead valign="top">
<tr>
<th align="left">Osteopontin isoforms</th>
<th align="center">OR</th>
<th align="center">95% CI</th>
<th align="center">p-value</th>
</tr>
</thead>
<tbody valign="top">
<tr>
<td align="left">OPNa</td>
<td align="center">1.223</td>
<td align="center">0.855&#x2013;1.749</td>
<td align="center">0.270</td>
</tr>
<tr>
<td align="left">OPNb</td>
<td align="center">1.070</td>
<td align="center">0.759&#x2013;1.507</td>
<td align="center">0.699</td>
</tr>
<tr>
<td align="left">OPNc</td>
<td align="center">
<bold>1.931</bold>
</td>
<td align="center">
<bold>1.018&#x2013;3.661</bold>
</td>
<td align="center">
<bold>0.044</bold>
</td>
</tr>
<tr>
<td align="left">OPN4</td>
<td align="center">0.962</td>
<td align="center">0.743&#x2013;1.248</td>
<td align="center">0.773</td>
</tr>
<tr>
<td align="left">OPN5</td>
<td align="center">1.144</td>
<td align="center">0.867&#x2013;1.509</td>
<td align="center">0.341</td>
</tr>
<tr>
<td align="left">
<bold>Integrins</bold>
</td>
<td align="center">
<bold>OR</bold>
</td>
<td align="center">
<bold>95% CI</bold>
</td>
<td align="center">
<bold>p-value</bold>
</td>
</tr>
<tr>
<td align="left">ITGA2</td>
<td align="center">0.685</td>
<td align="center">0.348&#x2013;1.349</td>
<td align="center">0.274</td>
</tr>
<tr>
<td align="left">ITGA3</td>
<td align="center">0.411</td>
<td align="center">0.135&#x2013;1.250</td>
<td align="center">0.117</td>
</tr>
<tr>
<td align="left">ITGA5</td>
<td align="center">0.889</td>
<td align="center">0.396&#x2013;1.996</td>
<td align="center">0.776</td>
</tr>
<tr>
<td align="left">ITGA6</td>
<td align="center">0.560</td>
<td align="center">0.234&#x2013;1.337</td>
<td align="center">0.191</td>
</tr>
<tr>
<td align="left">ITGA9</td>
<td align="center">0.675</td>
<td align="center">0.407&#x2013;1.120</td>
<td align="center">0.129</td>
</tr>
<tr>
<td align="left">ITGAV</td>
<td align="center">0.280</td>
<td align="center">0.065&#x2013;1.207</td>
<td align="center">0.088</td>
</tr>
<tr>
<td align="left">ITGB1</td>
<td align="center">0.333</td>
<td align="center">0.085&#x2013;1.305</td>
<td align="center">0.115</td>
</tr>
<tr>
<td align="left">ITGB3</td>
<td align="center">0.836</td>
<td align="center">0.642&#x2013;1.088</td>
<td align="center">0.182</td>
</tr>
</tbody>
</table>
<table-wrap-foot>
<fn>
<p>OR, odds ratio; CI, confidence interval. Bold values indicates significant associations.</p>
</fn>
</table-wrap-foot>
</table-wrap>
</sec>
</sec>
<sec sec-type="discussion" id="s4">
<title>Discussion</title>
<p>Osteopontin (OPN), a multifunctional protein, has been widely studied as a promising biomarker in various types of tumors for monitoring tumor progression, invasion, metastasis formation and drug resistance (<xref ref-type="bibr" rid="B13">13</xref>, <xref ref-type="bibr" rid="B25">25</xref>). The association between the aberrant expression of osteopontin and melanoma invasion, metastasis formation, and radio/drug resistance has been recently described (<xref ref-type="bibr" rid="B1">1</xref>, <xref ref-type="bibr" rid="B3">3</xref>, <xref ref-type="bibr" rid="B25">25</xref>&#x2013;<xref ref-type="bibr" rid="B27">27</xref>). The biological functions of tumor-associated gene products are extensively regulated via pre- and posttranscriptional modifications, resulting in alternative splicing of OPN. Alternative splicing of various mRNA products of a single gene is a critical mechanism for generating proteomic diversity. OPNa, OPNb, and OPNc variants were first described in glioma, and the two additional splice variants (OPN4 and OPN5) were found in esophageal adenocarcinomas and glioblastomas (<xref ref-type="bibr" rid="B28">28</xref>). Because the different splice variants of OPN are associated with different types of cancers, it is assumed that the isotypes may have different functions. Osteopontin isoforms display functional heterogeneity and cell and tissue specificity, which still poses challenges while providing opportunities for novel diagnostic, prognostic, and therapeutic strategies (<xref ref-type="bibr" rid="B13">13</xref>).</p>
<p>Most of the studies investigating the role of OPN splice variants have focused on the expression of <italic>OPNa</italic>, <italic>OPNb</italic>, and <italic>OPNc</italic>; however, the data in distinct tumor types are conflicting, and the functional heterogeneity of the variants serves as motivation for researchers to define the role of OPN splice variants in each type of cancer. In addition, at present, no data on the isoform expression patterns in malignant melanoma are available. Therefore, in this study, our primary aim was to study the expression profile of five <italic>OPN</italic> splice variants (<italic>OPNa</italic>, <italic>OPNb</italic>, <italic>OPNc</italic>, <italic>OPN4</italic>, and <italic>OPN5</italic>) in different types of malignant melanoma tissues and investigate the association with the clinicopathological features of tumor tissues. In addition, because OPN signaling occurs through different integrin receptors, we also aimed to examine the relative mRNA expression profile of eight integrins (<italic>ITGA2</italic>, <italic>ITGA3</italic>, <italic>ITGA5</italic>, <italic>ITGA6</italic>, <italic>ITGA9</italic>, <italic>ITGAV</italic>, <italic>ITGB1</italic>, and <italic>ITGB3</italic>) and analyze the correlation of the relative expression of osteopontin variants and integrins in the same melanoma samples.</p>
<p>We found elevated relative mRNA expression of <italic>OPN</italic> variants (<italic>OPNa</italic>, <italic>OPNb</italic>, and <italic>OPNc</italic>) in nodular melanomas and melanoma metastasis compared to samples of superficial spreading melanoma. The significant increase of these isoforms in the more advanced stages indicates that they may contribute to tumor progression and worse outcome, since lower survival rates were observed in NM and metastatic melanoma patients (<xref ref-type="bibr" rid="B29">29</xref>). The significant elevation of <italic>OPNc</italic> expression in thicker melanoma tissue samples suggests that it is associated with increasing Breslow thickness. The elevating tendencies of the expression levels of the other variants were similar; however, none were found to be significant in the comparison. Our further statistical analysis also confirmed the significant positive association of <italic>OPNc</italic> with Breslow thickness: a one-unit increase in <italic>OPNc</italic> expression is associated with a 0.217 increase in Breslow thickness. Based on our observations, it is possible that <italic>OPNc</italic> expression has a crucial role in melanoma tumor progression, and that elevated levels of this variant can contribute to progression toward advanced stages of disease and even the induction of metastasis formation, and it can thus serve as an indicator of an aggressive phenotype.</p>
<p>The expression of <italic>OPN</italic> splice variants has already been investigated in hematological malignancies, thyroid tumors, and gastric cancers (<xref ref-type="bibr" rid="B18">18</xref>, <xref ref-type="bibr" rid="B30">30</xref>). Wide variations were observed in the expression patterns and the predominantly expressed variant(s) depending on the tumor type; therefore, it is difficult to establish a possible universal nature or profile. It could be convenient to establish the expression profile of each splice variant in each distinct cancer type. To date, it has been observed that the OPNa mRNA levels were significantly associated with high TNM staging and unfavorable clinical outcomes in gastric cancer; moreover, <italic>OPNa</italic> and <italic>OPNb</italic> are correlated with short overall and disease-free survival of patients (<xref ref-type="bibr" rid="B30">30</xref>). It was pointed out that <italic>OPNc</italic> expression is also associated with advanced stage, tumor recurrence, and metastasis formation; thus, <italic>OPNc</italic> is considered to be a promising prognostic factor in breast cancer (<xref ref-type="bibr" rid="B15">15</xref>). In our results, the elevated expression of the <italic>OPNc</italic> variant in an advanced stage of primary melanoma and melanoma metastasis samples in addition to its significant correlation with the presence of metastasis indicates the importance of <italic>OPNc</italic> in melanoma progression, metastasis formation, and the relationship with the aggressive phenotype, which justifies its further investigation at multiple levels as a promising prognostic biomarker in malignant melanoma. Since no specific antibodies against these splice variants are currently available (except for <italic>OPNc</italic> from Gallus Immunotech Inc. which is a polyclonal antibody), the future development of the OPN isotype antibodies could also be an important step forward in the characterization of these variants. Moreover, investigating the specific role of each splice variant in melanoma progression could bring us closer to developing potential targetable molecules in melanoma therapy.</p>
<p>While the exact role of <italic>OPNc</italic> overexpression on tumor progression is unknown, there are several possible explanations for its association with metastasis. Since <italic>OPNc</italic> variant lacks exon 4, which contains the target sequence for transglutaminase, it lacks an important domain for calcium induced aggregation and transglutamination (<xref ref-type="bibr" rid="B31">31</xref>). <italic>OPNc</italic>, unlike the other isoforms, cannot form polymeric complexes. This might be the essential reason for the pathological role of <italic>OPNc</italic> and it may not be cross-linked with extracellular matrix and thus it results cell migration. The full length OPN aggregates and enhances cell adhesion and therefore reduces dissemination of tumor cells, whereas <italic>OPNc</italic> promotes tumor invasion and metastasis formation because of its lack of aggregation (<xref ref-type="bibr" rid="B32">32</xref>). The non-aggregative nature of <italic>OPNc</italic> is in concert with the relative resistance to polymerization (<xref ref-type="bibr" rid="B33">33</xref>). On the other hand, <italic>OPNc</italic> can stimulate cell proliferation rates independently of growth factors, a feature of proteins typically involved in tumor progression (<xref ref-type="bibr" rid="B34">34</xref>). While numerous studies suggest that OPN plays a key role in mediating tumor progression and metastasis by regulating various pathways, very few data are available for the role of different OPN splice variants, the expression patterns of the OPN isoforms in malignant melanoma was first described in the present study. In order to discover the detailed functional role of <italic>OPNc</italic>, the 3D structure of the variant might be useful. It is an important step that the tertiary structure of <italic>OPNc</italic> was successfully predicted by Sivakumar and this predicted structure might be used for computational drug design of <italic>OPNc</italic> with respect to cancer prevention (<xref ref-type="bibr" rid="B31">31</xref>).</p>
<p>Aside from the three most frequently studied OPN variants, we also investigated the expression of <italic>OPN4</italic> and <italic>OPN5</italic> isoforms that were recently described (<xref ref-type="bibr" rid="B4">4</xref>, <xref ref-type="bibr" rid="B35">35</xref>). Surprisingly, relative expression of <italic>OPN4</italic> and <italic>OPN5</italic> was low in primary as well as metastatic tissues. Though statistical analysis showed a significant difference in <italic>OPN5</italic> expression between nodular melanoma and melanoma metastasis histological subtypes, <italic>OPN4</italic> and <italic>OPN5</italic> were downregulated, and the median expression values did not exceed zero on the logarithmic scale (except in the case of <italic>OPN4</italic> in melanoma metastasis). Although significant differences were not found when comparing their expression between the sample groups for different Breslow thicknesses, logistic regression demonstrated a significant negative correlation between <italic>OPN4</italic> and Breslow thickness and conversely in the case of <italic>OPNc</italic>, which was positive correlated. Moreover, the analysis of the Spearman&#x2019;s correlation between osteopontin splice variants and integrins in expression data revealed the positive correlation of <italic>OPN4</italic> expression with that of most of the integrins and the negative correlation of <italic>ITGA2</italic> expression with that of most of the osteopontins, suggesting that <italic>OPN4</italic> may have an expression profile more similar to that of the integrins than that of the osteopontins.</p>
<p>The expression of the <italic>OPN4</italic> and <italic>OPN5</italic> variants was previously investigated in esophageal adenocarcinoma tissue samples (<xref ref-type="bibr" rid="B4">4</xref>), where, unlike in our study, it was found that the expression of <italic>OPN4</italic> and <italic>OPN5</italic> was elevated in primary tumors when compared to normal and Barrett&#x2019;s samples, and the isoforms were co-overexpressed. In another study, the expression of these two isoforms was found to be variable in most of the tested 7&#xa0;cell lines (prostate tumor, ovarian cancer, B-cell precursor acute lymphoid leukemia, breast cancer, colorectal cancer, and thyroid and lung tumors) (<xref ref-type="bibr" rid="B31">31</xref>). Except for in the two breast cancer cell lines, <italic>OPN4</italic> and <italic>OPN5</italic> were found to be co-expressed in the other 5&#xa0;cell lines, but the expression patterns differed from those of the previously characterized <italic>OPNa, OPNb,</italic> and <italic>OPNc</italic> variants (<xref ref-type="bibr" rid="B31">31</xref>). According to the study of Chou et al., besides the predominant expression of <italic>OPNa</italic> variant, <italic>OPN4</italic> was found to be minimally expressed in normal skin and nonmelanoma skin cancer, but <italic>OPN5</italic> exhibited higher expression in normal skin than <italic>OPNb</italic> and <italic>OPNc</italic>, and <italic>OPN5</italic> was more highly expressed in nonmelanoma skin cancer than <italic>OPNc</italic> (<xref ref-type="bibr" rid="B22">22</xref>). Taken together, the expression of <italic>OPN4</italic> and <italic>OPN5</italic> splice variants appears to vary widely in distinct tumor types, but in melanoma, they slightly have a different expression profile than the three predominant splice variants.</p>
<p>In connection with the expression profile of integrins, our results show that the relative mRNA expression levels of the investigated integrin genes are extremely low except in one case. Median values of the integrin expression levels in SSM, NM, and melanoma metastasis were equally below zero, which means they are downregulated compared to the nevus control. As the exception, <italic>ITGB3</italic> appeared to be upregulated in SSM and NM tissue samples. Moreover, when comparing integrin gene expression in melanoma tissues with distinct Breslow thickness, a significantly higher <italic>ITGB3</italic> expression was observed in thicker tissue samples (2&#x2013;4&#xa0;mm and &#x3e; 4&#xa0;mm) compared to tissues with lower Breslow thickness (&#x3c;2&#xa0;mm) (<italic>p</italic> &#x3d; 0.004). This result is in accordance with the relevant literature: in malignant melanoma, upregulated expression of subunit &#x3b2;3 was found in the vertical growth phase, which was linked with disease progression and correlated with poor survival and lymph node and lung metastasis formation (<xref ref-type="bibr" rid="B36">36</xref>, <xref ref-type="bibr" rid="B37">37</xref>).</p>
<p>Other previous <italic>in vivo</italic> and <italic>in vitro</italic> studies have also investigated altered integrin expression, summarized in detail by Arias-Mejias et al. (<xref ref-type="bibr" rid="B38">38</xref>). It was found that elevated expression of integrin &#x3b2;3 protein (the dimerized form is &#x3b1;v&#x3b2;3 or &#x3b1;IIb&#x3b2;3) in human melanoma cells and tissues was associated with tumor progression, organ-specific metastasis formation, disease recurrence, and decreased long-term survival (<xref ref-type="bibr" rid="B39">39</xref>, <xref ref-type="bibr" rid="B40">40</xref>). In our earlier study we identified metastasis correlated genes, including many genes involved in signaling in the immune system (HLA antigens), cell adhesion and cell motility networks (<xref ref-type="bibr" rid="B40">40</xref>, <xref ref-type="bibr" rid="B41">41</xref>). These networks involve genes such as that of integrins (<italic>ITGA2</italic>, <italic>ITGA3</italic>, <italic>ITGA4</italic>, <italic>ITGA9</italic>, <italic>ITGB5</italic> or <italic>ITGB8</italic>). Investigating the expression of these genes in metastatic primary melanomas and metastases, we found that <italic>ITGA3</italic> was downregulated in both regional and distant organ metastases compared to the metastatic primary lesions. In the present study, even the direction of the mRNA expression was similar for <italic>ITGA3</italic>, we observed significant decrease only for the <italic>ITGA2</italic> gene in the metastatic tumors. The inconsistency between the two investigations can be explained by the fact that the composition of primary tumor groups was different between the two studies.</p>
<p>In our case, interestingly, a significant difference between the histological subtypes was observed only in the expression of <italic>ITGA2</italic>; however, it displays a decreasing tendency in NM and metastasis samples compared to SSM. Relative expression of integrins in melanoma tissue samples with distinct Breslow thicknesses varies, six integrins (<italic>ITGA3</italic>, <italic>ITGA6</italic>, <italic>ITGA9</italic>, <italic>ITGAV</italic>, <italic>ITGB1</italic>, and <italic>ITGB3</italic>) out of the eight showed a significant difference between the 2&#x2013;4&#xa0;mm and the &#x3e; 4&#xa0;mm group (lowest expression in the thickest group), and again, expression of <italic>ITGA2</italic> showed a significant decrease as the thickness increased. Linear regression analysis indicated that while <italic>ITGA5</italic> had positive correlation with Breslow thickness (as a continuous variant) <italic>ITGA2</italic> was in strong significant inverse correlation with the Breslow thickness of the tumor. These results suggest that downregulation of <italic>ITGA2</italic> may be linked with tumor progression in malignant melanoma. This hypothesis seems to be supported by the results of <italic>in vitro</italic> studies with breast cancer mouse models, which suggest that integrin &#x3b1;2 might function as a metastasis suppressor (<xref ref-type="bibr" rid="B42">42</xref>). Moreover, decreased expression of the &#x3b1;2 subunit was found to be associated with more advanced status, such as higher tumor nodal status or presence of metastasis (<xref ref-type="bibr" rid="B41">41</xref>). Madamanchi et al. describe that certain other cancer types (prostate, colon, and lung cancer) also seem to be associated with reduced integrin &#x3b1;2&#x3b2;1, which is associated with tumor progression and metastasis. However, they also note that other cancer types were associated with high &#x3b1;2&#x3b2;1 integrin expression levels; hence, the exact biological role of this integrin is being heavily debated (<xref ref-type="bibr" rid="B43">43</xref>). Indeed, the relevance of the &#x3b1;2&#x3b2;1 integrin as a main regulator of metastasis in tumor cells was discovered only in recent years, and these findings appear to be controversial compared with the results of the previously mentioned studies. The crucial role of the &#x3b1;2&#x3b2;1 integrin has been determined in cancer types including melanoma, as it is responsible for regulating cell migration, survival, proliferation, and metastasis formation in the lung and liver (<xref ref-type="bibr" rid="B44">44</xref>, <xref ref-type="bibr" rid="B45">45</xref>). Upregulation of &#x3b1;2&#x3b2;1 was found in highly metastatic melanoma compared to nonmetastatic or poorly metastatic cell lines, where it was associated with enhanced cell migration (<xref ref-type="bibr" rid="B38">38</xref>). Increased expression of &#x3b1;2&#x3b2;1 in malignant melanoma compared to benign tumors was found to stimulate angiogenesis and facilitate tumor growth (<xref ref-type="bibr" rid="B46">46</xref>).</p>
<p>Though acquiring a comprehensive understanding of integrin signaling is challenging, some possible reasons may explain the differences in the expression of the various integrins and their role in tumor progression. Single nucleotide polymorphisms may change the affinity of <italic>ITGA2</italic> for transcription factors, which can alter the transcription rate (<xref ref-type="bibr" rid="B47">47</xref>). Enhancing transcription&#x2013;coactivator complex binding can increase <italic>ITGA2</italic> transcription. In addition, different posttranslational modifications, such as sialylation and glycosylation, can modify the role of integrins in tumor progression (<xref ref-type="bibr" rid="B48">48</xref>, <xref ref-type="bibr" rid="B49">49</xref>).</p>
<p>The data of the current study are the first to describe the relative mRNA expression of five osteopontin splice variants in primary and metastatic melanoma tissue samples. We found that the expression levels of <italic>OPNa, OPNb</italic>, and <italic>OPNc</italic> were significantly higher in the metastatic lesions compared to the primary tumors, and <italic>OPNc</italic> was significantly positively correlated with increasing Breslow thickness in the primary tumors. The expression of the recently described <italic>OPN4</italic> and <italic>OPN5</italic> isoforms was shown to be downregulated in the evaluated melanoma subtypes, and <italic>OPN4</italic> exhibited a significant negative correlation with Breslow thickness. The relative expression of eight integrins was very low; only <italic>ITGB3</italic> showed detectable expression in metastatic tumors compared to the primary lesions; moreover, <italic>ITGA2</italic> showed significant negative correlation with the Breslow thickness of the primary tumors. Our data show that high expression of <italic>OPNa, OPNb</italic>, and <italic>OPNc</italic> is associated with poor prognosis, and <italic>OPN4</italic> and <italic>ITGA2</italic> may have an opposite role in melanoma progression. Nevertheless, further studies are needed to more specifically characterize the involvement of osteopontin splice variants in malignant melanoma progression and their interaction with integrins in cancer.</p>
</sec>
</body>
<back>
<sec sec-type="data-availability" id="s5">
<title>Data Availability Statement</title>
<p>The original data presented in this study are included in the article as well as in the <xref ref-type="sec" rid="s10">Supplementary Material</xref>, further inquiries can be directed to the corresponding author.</p>
</sec>
<sec id="s6">
<title>Ethics Statement</title>
<p>The study was conducted according to the guidelines of the Declaration of Helsinki and approved by the Regional and Institutional Ethics Committee of the University of Debrecen [Document No.: 25364-1/2012/EKU (449/PI/12. and DE RKEB/IKEB: 4820-2017)] and by the Ethics Committee of the Hungarian Scientific Council on Health (Reference No.: 6674/2014 EKU and 17876/218). Informed consent was obtained from all subjects involved in the study. The patients/participants provided their written informed consent to participate in this study.</p>
</sec>
<sec id="s7">
<title>Author Contributions</title>
<p>MB, KJ, and TK conceived and designed the study. KJ and TK performed the experiments. KJ, TK, and PP analyzed the data. KJ, IS, PP, and VK performed statistical analyses and designed the figures and tables. KJ wrote the first draft of the manuscript. VK, IS, and KJ were involved to write the final version of the manuscript. PP, TK, KJ, VK, and IS approved the manuscript. MB finalized the manuscript. MB were responsible for supervision and funding acquisition.</p>
</sec>
<sec id="s8">
<title>Funding</title>
<p>This research was co-financed by the National Research Development and Innovation Fund (grant number K-112327 and K-135752), the European Regional Development Fund (GINOP-2.3.2-15-2016-00005), and the Hungarian Academy of Sciences (TK2016-78). New National Excellence Program of the Ministry for Innovation and Technology from the Source of National research, Development and Innovation Fund (UNKP-21-4-II-DE-361, UNKP-21-4-II-DE-136, and UNKP-21-4-II-DE-363).</p>
</sec>
<sec sec-type="COI-statement" id="s9">
<title>Conflict of Interest</title>
<p>The authors declare that the research was conducted in the absence of any commercial or financial relationships that could be construed as a potential conflict of interest.</p>
</sec>
<sec id="s10">
<title>Supplementary Material</title>
<p>The Supplementary Material for this article can be found online at: <ext-link ext-link-type="uri" xlink:href="https://www.por-journal.com/articles/10.3389/pore.2022.1610608/full#supplementary-material">https://www.por-journal.com/articles/10.3389/pore.2022.1610608/full&#x23;supplementary-material</ext-link>
</p>
<supplementary-material>
<label>Supplementary Figure S1</label>
<caption>
<p>Relative mRNA expression of ITGA2 gene in malignant melanoma tissue samples from tumors with different Clark stages: earlier stages (II&#x2013;III. <italic>n</italic> &#x3d; 13) and later stages (IV&#x2013;V. <italic>n</italic> &#x3d; 17).</p>
</caption>
</supplementary-material>
<supplementary-material>
<label>Supplementary Figure S2</label>
<caption>
<p>Graphs illustrating the significant positive correlations (Spearman&#x2019;s rho) between expression of OPN4 and integrin genes (<italic>ITGB3</italic>, <italic>ITGA5</italic>, <italic>ITGA9</italic>, <italic>ITGAV</italic>, <italic>ITGB1</italic>, <italic>ITGA3</italic>, and <italic>ITGA6</italic>).</p>
</caption>
</supplementary-material>
<supplementary-material>
<label>Supplementary Figure S3</label>
<caption>
<p>Graphs illustrating the significant positive correlations (Spearman&#x2019;s rho) between the expression of <italic>OPN5</italic> and integrin genes (<italic>ITGA2</italic>, <italic>ITGAV</italic>, <italic>ITGB1</italic>, <italic>ITGA3</italic>, and <italic>ITGA6</italic>).</p>
</caption>
</supplementary-material>
<supplementary-material>
<label>Supplementary Figure S4</label>
<caption>
<p>Graphs illustrating the significant negative correlations (Spearman&#x2019;s rho) between the gene expression of <italic>ITGA2</italic> and osteopontin splice variants (<italic>OPNa</italic>, <italic>OPNb</italic>, <italic>OPNc</italic>).</p>
</caption>
</supplementary-material>
<supplementary-material>
<label>Supplementary Figure S5</label>
<caption>
<p>Graphs illustrating the significant negative correlation (Spearman&#x2019;s rho) between the expression of ITGA6 and OPNc.</p>
</caption>
</supplementary-material>
<supplementary-material xlink:href="Table1.docx" id="SM1" mimetype="application/docx" xmlns:xlink="http://www.w3.org/1999/xlink"/>
<supplementary-material xlink:href="DataSheet1.zip" id="SM2" mimetype="application/zip" xmlns:xlink="http://www.w3.org/1999/xlink"/>
<supplementary-material xlink:href="Table2.docx" id="SM3" mimetype="application/docx" xmlns:xlink="http://www.w3.org/1999/xlink"/>
<supplementary-material xlink:href="Table5.docx" id="SM4" mimetype="application/docx" xmlns:xlink="http://www.w3.org/1999/xlink"/>
<supplementary-material xlink:href="Table3.docx" id="SM5" mimetype="application/docx" xmlns:xlink="http://www.w3.org/1999/xlink"/>
<supplementary-material xlink:href="Table4.docx" id="SM6" mimetype="application/docx" xmlns:xlink="http://www.w3.org/1999/xlink"/>
</sec>
<ref-list>
<title>References</title>
<ref id="B1">
<label>1.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Zhao</surname>
<given-names>Y</given-names>
</name>
<name>
<surname>Huang</surname>
<given-names>C</given-names>
</name>
</person-group>. <article-title>The Role of Osteopontin in the Development and Metastasis of Melanoma</article-title>. <source>Melanoma Res</source> (<year>2021</year>) <volume>31</volume>(<issue>4</issue>):<fpage>283</fpage>&#x2013;<lpage>9</lpage>. <pub-id pub-id-type="doi">10.1097/CMR.0000000000000753</pub-id> </citation>
</ref>
<ref id="B2">
<label>2.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Rangel</surname>
<given-names>J</given-names>
</name>
<name>
<surname>Nosrati</surname>
<given-names>M</given-names>
</name>
<name>
<surname>Torabian</surname>
<given-names>S</given-names>
</name>
<name>
<surname>Shaikh</surname>
<given-names>L</given-names>
</name>
<name>
<surname>Leong</surname>
<given-names>SP</given-names>
</name>
<name>
<surname>Haqq</surname>
<given-names>C</given-names>
</name>
<etal/>
</person-group> <article-title>Osteopontin as a Molecular Prognostic Marker for Melanoma</article-title>. <source>Cancer</source> (<year>2008</year>) <volume>112</volume>(<issue>1</issue>):<fpage>144</fpage>&#x2013;<lpage>50</lpage>. <pub-id pub-id-type="doi">10.1002/cncr.23147</pub-id> </citation>
</ref>
<ref id="B3">
<label>3.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Gimba</surname>
<given-names>ERP</given-names>
</name>
<name>
<surname>Brum</surname>
<given-names>MCM</given-names>
</name>
<name>
<surname>De Moraes</surname>
<given-names>GN</given-names>
</name>
</person-group>. <article-title>Full-length Osteopontin and its Splice Variants as Modulators of Chemoresistance and Radioresistance (Review)</article-title>. <source>Int J Oncol</source> (<year>2019</year>) <volume>54</volume>(<issue>2</issue>):<fpage>420</fpage>&#x2013;<lpage>30</lpage>. <pub-id pub-id-type="doi">10.3892/ijo.2018.4656</pub-id> </citation>
</ref>
<ref id="B4">
<label>4.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Lin</surname>
<given-names>J</given-names>
</name>
<name>
<surname>Myers</surname>
<given-names>AL</given-names>
</name>
<name>
<surname>Wang</surname>
<given-names>Z</given-names>
</name>
<name>
<surname>Nancarrow</surname>
<given-names>DJ</given-names>
</name>
<name>
<surname>Ferrer-Torres</surname>
<given-names>D</given-names>
</name>
<name>
<surname>Handlogten</surname>
<given-names>A</given-names>
</name>
<etal/>
</person-group> <article-title>Osteopontin (OPN/SPP1) Isoforms Collectively Enhance Tumor Cell Invasion and Dissemination in Esophageal Adenocarcinoma</article-title>. <source>Oncotarget</source> (<year>2015</year>) <volume>6</volume>(<issue>26</issue>):<fpage>22239</fpage>&#x2013;<lpage>57</lpage>. <pub-id pub-id-type="doi">10.18632/oncotarget.4161</pub-id> </citation>
</ref>
<ref id="B5">
<label>5.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Yokosaki</surname>
<given-names>Y</given-names>
</name>
<name>
<surname>Tanaka</surname>
<given-names>K</given-names>
</name>
<name>
<surname>Higashikawa</surname>
<given-names>F</given-names>
</name>
<name>
<surname>Yamashita</surname>
<given-names>K</given-names>
</name>
<name>
<surname>Eboshida</surname>
<given-names>A</given-names>
</name>
</person-group>. <article-title>Distinct Structural Requirements for Binding of the Integrins &#x3b1;v&#x3b2;6, &#x3b1;v&#x3b2;3, &#x3b1;v&#x3b2;5, &#x3b1;5&#x3b2;1 and &#x3b1;9&#x3b2;1 to Osteopontin</article-title>. <source>Matrix Biol</source> (<year>2005</year>) <volume>24</volume>(<issue>6</issue>):<fpage>418</fpage>&#x2013;<lpage>27</lpage>. <pub-id pub-id-type="doi">10.1016/j.matbio.2005.05.005</pub-id> </citation>
</ref>
<ref id="B6">
<label>6.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Inoue</surname>
<given-names>M</given-names>
</name>
<name>
<surname>Shinohara</surname>
<given-names>ML</given-names>
</name>
</person-group>. <article-title>Intracellular Osteopontin (iOPN) and Immunity</article-title>. <source>Immunol Res</source> (<year>2011</year>) <volume>49</volume>(<issue>1-3</issue>):<fpage>160</fpage>&#x2013;<lpage>72</lpage>. <pub-id pub-id-type="doi">10.1007/s12026-010-8179-5</pub-id> </citation>
</ref>
<ref id="B7">
<label>7.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Del Prete</surname>
<given-names>A</given-names>
</name>
<name>
<surname>Scutera</surname>
<given-names>S</given-names>
</name>
<name>
<surname>Sozzani</surname>
<given-names>S</given-names>
</name>
<name>
<surname>Musso</surname>
<given-names>T</given-names>
</name>
</person-group>. <article-title>Role of Osteopontin in Dendritic Cell Shaping of Immune Responses</article-title>. <source>Cytokine Growth Factor Rev</source> (<year>2019</year>) <volume>50</volume>:<fpage>19</fpage>&#x2013;<lpage>28</lpage>. <pub-id pub-id-type="doi">10.1016/j.cytogfr.2019.05.004</pub-id> </citation>
</ref>
<ref id="B8">
<label>8.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Leavenworth</surname>
<given-names>JW</given-names>
</name>
<name>
<surname>Verbinnen</surname>
<given-names>B</given-names>
</name>
<name>
<surname>Wang</surname>
<given-names>Q</given-names>
</name>
<name>
<surname>Shen</surname>
<given-names>E</given-names>
</name>
<name>
<surname>Cantor</surname>
<given-names>H</given-names>
</name>
</person-group>. <article-title>Intracellular Osteopontin Regulates Homeostasis and Function of Natural Killer Cells</article-title>. <source>Proc Natl Acad Sci U S A</source> (<year>2015</year>) <volume>112</volume>(<issue>2</issue>):<fpage>494</fpage>&#x2013;<lpage>9</lpage>. <pub-id pub-id-type="doi">10.1073/pnas.1423011112</pub-id> </citation>
</ref>
<ref id="B9">
<label>9.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Anborgh</surname>
<given-names>PH</given-names>
</name>
<name>
<surname>Mutrie</surname>
<given-names>JC</given-names>
</name>
<name>
<surname>Tuck</surname>
<given-names>AB</given-names>
</name>
<name>
<surname>Chambers</surname>
<given-names>AF</given-names>
</name>
</person-group>. <article-title>Role of the Metastasis-Promoting Protein Osteopontin in the Tumour Microenvironment</article-title>. <source>J Cel Mol Med</source> (<year>2010</year>) <volume>14</volume>(<issue>8</issue>):<fpage>2037</fpage>&#x2013;<lpage>44</lpage>. <pub-id pub-id-type="doi">10.1111/j.1582-4934.2010.01115.x</pub-id> </citation>
</ref>
<ref id="B10">
<label>10.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Cho</surname>
<given-names>HJ</given-names>
</name>
<name>
<surname>Cho</surname>
<given-names>HJ</given-names>
</name>
<name>
<surname>Kim</surname>
<given-names>HS</given-names>
</name>
</person-group>. <article-title>Osteopontin: A Multifunctional Protein at the Crossroads of Inflammation, Atherosclerosis, and Vascular Calcification</article-title>. <source>Curr Atheroscler Rep</source> (<year>2009</year>) <volume>11</volume>(<issue>3</issue>):<fpage>206</fpage>&#x2013;<lpage>13</lpage>. <pub-id pub-id-type="doi">10.1007/s11883-009-0032-8</pub-id> </citation>
</ref>
<ref id="B11">
<label>11.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Pang</surname>
<given-names>X</given-names>
</name>
<name>
<surname>Gong</surname>
<given-names>K</given-names>
</name>
<name>
<surname>Zhang</surname>
<given-names>X</given-names>
</name>
<name>
<surname>Wu</surname>
<given-names>S</given-names>
</name>
<name>
<surname>Cui</surname>
<given-names>Y</given-names>
</name>
<name>
<surname>Qian</surname>
<given-names>BZ</given-names>
</name>
<etal/>
</person-group> <article-title>Osteopontin as a Multifaceted Driver of Bone Metastasis and Drug Resistance</article-title>. <source>Pharmacol Res</source> (<year>2019</year>) <volume>144</volume>:<fpage>235</fpage>&#x2013;<lpage>44</lpage>. <pub-id pub-id-type="doi">10.1016/j.phrs.2019.04.030</pub-id> </citation>
</ref>
<ref id="B12">
<label>12.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Briones-Orta</surname>
<given-names>MA</given-names>
</name>
<name>
<surname>Avendano-Vazquez</surname>
<given-names>SE</given-names>
</name>
<name>
<surname>Aparicio-Bautista</surname>
<given-names>DI</given-names>
</name>
<name>
<surname>Coombes</surname>
<given-names>JD</given-names>
</name>
<name>
<surname>Weber</surname>
<given-names>GF</given-names>
</name>
<name>
<surname>Syn</surname>
<given-names>WK</given-names>
</name>
<etal/>
</person-group> <article-title>Osteopontin Splice Variants and Polymorphisms in Cancer Progression and Prognosis</article-title>. <source>Biochim Biophys Acta Rev Cancer</source> (<year>2017</year>) <volume>1868</volume>(<issue>1</issue>):<fpage>93</fpage>&#x2013;<lpage>108</lpage>. <pub-id pub-id-type="doi">10.1016/j.bbcan.2017.02.005</pub-id> </citation>
</ref>
<ref id="B13">
<label>13.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Hao</surname>
<given-names>C</given-names>
</name>
<name>
<surname>Cui</surname>
<given-names>Y</given-names>
</name>
<name>
<surname>Owen</surname>
<given-names>S</given-names>
</name>
<name>
<surname>Li</surname>
<given-names>W</given-names>
</name>
<name>
<surname>Cheng</surname>
<given-names>S</given-names>
</name>
<name>
<surname>Jiang</surname>
<given-names>WG</given-names>
</name>
<etal/>
</person-group> <article-title>Human Osteopontin: Potential Clinical Applications in Cancer (Review)</article-title>. <source>Int J Mol Med</source> (<year>2017</year>) <volume>39</volume>(<issue>6</issue>):<fpage>1327</fpage>&#x2013;<lpage>37</lpage>. <pub-id pub-id-type="doi">10.3892/ijmm.2017.2964</pub-id> </citation>
</ref>
<ref id="B14">
<label>14.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Lamort</surname>
<given-names>AS</given-names>
</name>
<name>
<surname>Giopanou</surname>
<given-names>I</given-names>
</name>
<name>
<surname>Psallidas</surname>
<given-names>I</given-names>
</name>
<name>
<surname>Stathopoulos</surname>
<given-names>GT</given-names>
</name>
</person-group>. <article-title>Osteopontin as a Link between Inflammation and Cancer: The Thorax in the Spotlight</article-title>. <source>Cells</source> (<year>2019</year>) <volume>8</volume>(<issue>8</issue>):<fpage>E815</fpage>. <pub-id pub-id-type="doi">10.3390/cells8080815</pub-id> </citation>
</ref>
<ref id="B15">
<label>15.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Pang</surname>
<given-names>H</given-names>
</name>
<name>
<surname>Lu</surname>
<given-names>H</given-names>
</name>
<name>
<surname>Song</surname>
<given-names>H</given-names>
</name>
<name>
<surname>Meng</surname>
<given-names>Q</given-names>
</name>
<name>
<surname>Zhao</surname>
<given-names>Y</given-names>
</name>
<name>
<surname>Liu</surname>
<given-names>N</given-names>
</name>
<etal/>
</person-group> <article-title>Prognostic Values of Osteopontin-C, E-Cadherin and Beta-Catenin in Breast Cancer</article-title>. <source>Cancer Epidemiol</source> (<year>2013</year>) <volume>37</volume>(<issue>6</issue>):<fpage>985</fpage>&#x2013;<lpage>92</lpage>. <pub-id pub-id-type="doi">10.1016/j.canep.2013.08.005</pub-id> </citation>
</ref>
<ref id="B16">
<label>16.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Sun</surname>
<given-names>SJ</given-names>
</name>
<name>
<surname>Wu</surname>
<given-names>CC</given-names>
</name>
<name>
<surname>Sheu</surname>
<given-names>GT</given-names>
</name>
<name>
<surname>Chang</surname>
<given-names>HY</given-names>
</name>
<name>
<surname>Chen</surname>
<given-names>MY</given-names>
</name>
<name>
<surname>Lin</surname>
<given-names>YY</given-names>
</name>
<etal/>
</person-group> <article-title>Integrin &#x3b2;3 and CD44 Levels Determine the Effects of the OPN-A Splicing Variant on Lung Cancer Cell Growth</article-title>. <source>Oncotarget</source> (<year>2016</year>) <volume>7</volume>(<issue>34</issue>):<fpage>55572</fpage>&#x2013;<lpage>84</lpage>. <pub-id pub-id-type="doi">10.18632/oncotarget.10865</pub-id> </citation>
</ref>
<ref id="B17">
<label>17.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Han</surname>
<given-names>X</given-names>
</name>
<name>
<surname>Wang</surname>
<given-names>W</given-names>
</name>
<name>
<surname>He</surname>
<given-names>J</given-names>
</name>
<name>
<surname>Jiang</surname>
<given-names>L</given-names>
</name>
<name>
<surname>Li</surname>
<given-names>X</given-names>
</name>
</person-group>. <article-title>Osteopontin as a Biomarker for Osteosarcoma Therapy and Prognosis</article-title>. <source>Oncol Lett</source> (<year>2019</year>) <volume>17</volume>(<issue>3</issue>):<fpage>2592</fpage>&#x2013;<lpage>8</lpage>. <pub-id pub-id-type="doi">10.3892/ol.2019.9905</pub-id> </citation>
</ref>
<ref id="B18">
<label>18.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Viana</surname>
<given-names>B</given-names>
</name>
<name>
<surname>Gomes</surname>
<given-names>AVP</given-names>
</name>
<name>
<surname>Gimba</surname>
<given-names>ERP</given-names>
</name>
<name>
<surname>Ferreira</surname>
<given-names>LB</given-names>
</name>
</person-group>. <article-title>Osteopontin Expression in Thyroid Cancer: Deciphering EMT-Related Molecular Mechanisms</article-title>. <source>Biomedicines</source> (<year>2021</year>) <volume>9</volume>(<issue>10</issue>):<fpage>1372</fpage>. <pub-id pub-id-type="doi">10.3390/biomedicines9101372</pub-id> </citation>
</ref>
<ref id="B19">
<label>19.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Amilca-Seba</surname>
<given-names>K</given-names>
</name>
<name>
<surname>Sabbah</surname>
<given-names>M</given-names>
</name>
<name>
<surname>Larsen</surname>
<given-names>AK</given-names>
</name>
<name>
<surname>Denis</surname>
<given-names>JA</given-names>
</name>
</person-group>. <article-title>Osteopontin as a Regulator of Colorectal Cancer Progression and its Clinical Applications</article-title>. <source>Cancers (Basel)</source> (<year>2021</year>) <volume>13</volume>(<issue>15</issue>):<fpage>3793</fpage>. <pub-id pub-id-type="doi">10.3390/cancers13153793</pub-id> </citation>
</ref>
<ref id="B20">
<label>20.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Rakosy</surname>
<given-names>Z</given-names>
</name>
<name>
<surname>Ecsedi</surname>
<given-names>S</given-names>
</name>
<name>
<surname>Toth</surname>
<given-names>R</given-names>
</name>
<name>
<surname>Vizkeleti</surname>
<given-names>L</given-names>
</name>
<name>
<surname>Hernandez-Vargas</surname>
<given-names>H</given-names>
</name>
<name>
<surname>Lazar</surname>
<given-names>V</given-names>
</name>
<etal/>
</person-group> <article-title>Integrative Genomics Identifies Gene Signature Associated with Melanoma Ulceration</article-title>. <source>PLoS One</source> (<year>2013</year>) <volume>8</volume>(<issue>1</issue>):<fpage>e54958</fpage>. <pub-id pub-id-type="doi">10.1371/journal.pone.0054958</pub-id> </citation>
</ref>
<ref id="B21">
<label>21.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kiss</surname>
<given-names>T</given-names>
</name>
<name>
<surname>Ecsedi</surname>
<given-names>S</given-names>
</name>
<name>
<surname>Vizkeleti</surname>
<given-names>L</given-names>
</name>
<name>
<surname>Koroknai</surname>
<given-names>V</given-names>
</name>
<name>
<surname>Emri</surname>
<given-names>G</given-names>
</name>
<name>
<surname>Kovacs</surname>
<given-names>N</given-names>
</name>
<etal/>
</person-group> <article-title>The Role of Osteopontin Expression in Melanoma Progression</article-title>. <source>Tumour Biol</source> (<year>2015</year>) <volume>36</volume>(<issue>10</issue>):<fpage>7841</fpage>&#x2013;<lpage>7</lpage>. <pub-id pub-id-type="doi">10.1007/s13277-015-3495-y</pub-id> </citation>
</ref>
<ref id="B22">
<label>22.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Chou</surname>
<given-names>CF</given-names>
</name>
<name>
<surname>Huang</surname>
<given-names>CC</given-names>
</name>
<name>
<surname>Bin Dabil</surname>
<given-names>N</given-names>
</name>
<name>
<surname>Chang</surname>
<given-names>PL</given-names>
</name>
</person-group>. <article-title>Assessing SPP1/Osteopontin (OPN) Splice Variants and Their Association to Nonmelanoma Skin Cancer by Absolute Quantification: Identification of OPN-5 Subvariants and Their Protein Coding Potential</article-title>. <source>Cancer Invest</source> (<year>2021</year>) <volume>39</volume>(<issue>6-7</issue>):<fpage>559</fpage>&#x2013;<lpage>70</lpage>. <pub-id pub-id-type="doi">10.1080/07357907.2021.1933015</pub-id> </citation>
</ref>
<ref id="B23">
<label>23.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Livak</surname>
<given-names>KJ</given-names>
</name>
<name>
<surname>Schmittgen</surname>
<given-names>TD</given-names>
</name>
</person-group>. <article-title>Analysis of Relative Gene Expression Data Using Real-Time Quantitative PCR and the 2(-Delta Delta C(T)) Method</article-title>. <source>Methods</source> (<year>2001</year>) <volume>25</volume>(<issue>4</issue>):<fpage>402</fpage>&#x2013;<lpage>8</lpage>. <pub-id pub-id-type="doi">10.1006/meth.2001.1262</pub-id> </citation>
</ref>
<ref id="B24">
<label>24.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Scolyer</surname>
<given-names>RA</given-names>
</name>
<name>
<surname>Rawson</surname>
<given-names>RV</given-names>
</name>
<name>
<surname>Gershenwald</surname>
<given-names>JE</given-names>
</name>
<name>
<surname>Ferguson</surname>
<given-names>PM</given-names>
</name>
<name>
<surname>Prieto</surname>
<given-names>VG</given-names>
</name>
</person-group>. <article-title>Melanoma Pathology Reporting and Staging</article-title>. <source>Mod Pathol</source> (<year>2020</year>) <volume>33</volume>(<issue>1</issue>):<fpage>15</fpage>&#x2013;<lpage>24</lpage>. <pub-id pub-id-type="doi">10.1038/s41379-019-0402-x</pub-id> </citation>
</ref>
<ref id="B25">
<label>25.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Patel</surname>
<given-names>V</given-names>
</name>
<name>
<surname>Szasz</surname>
<given-names>I</given-names>
</name>
<name>
<surname>Koroknai</surname>
<given-names>V</given-names>
</name>
<name>
<surname>Kiss</surname>
<given-names>T</given-names>
</name>
<name>
<surname>Balazs</surname>
<given-names>M</given-names>
</name>
</person-group>. <article-title>Molecular Alterations Associated with Acquired Drug Resistance during Combined Treatment with Encorafenib and Binimetinib in Melanoma Cell Lines</article-title>. <source>Cancers</source> (<year>2021</year>) <volume>13</volume>(<issue>23</issue>):<fpage>6058</fpage>. <pub-id pub-id-type="doi">10.3390/cancers13236058</pub-id> </citation>
</ref>
<ref id="B26">
<label>26.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kiss</surname>
<given-names>T</given-names>
</name>
<name>
<surname>Jambor</surname>
<given-names>K</given-names>
</name>
<name>
<surname>Koroknai</surname>
<given-names>V</given-names>
</name>
<name>
<surname>Szasz</surname>
<given-names>I</given-names>
</name>
<name>
<surname>Bardos</surname>
<given-names>H</given-names>
</name>
<name>
<surname>Mokanszki</surname>
<given-names>A</given-names>
</name>
<etal/>
</person-group> <article-title>Silencing Osteopontin Expression Inhibits Proliferation, Invasion and Induce Altered Protein Expression in Melanoma Cells</article-title>. <source>Pathol Oncol Res</source> (<year>2021</year>) <volume>27</volume>:<fpage>581395</fpage>. <pub-id pub-id-type="doi">10.3389/pore.2021.581395</pub-id> </citation>
</ref>
<ref id="B27">
<label>27.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Szasz</surname>
<given-names>I</given-names>
</name>
<name>
<surname>Koroknai</surname>
<given-names>V</given-names>
</name>
<name>
<surname>Kiss</surname>
<given-names>T</given-names>
</name>
<name>
<surname>Vizkeleti</surname>
<given-names>L</given-names>
</name>
<name>
<surname>Adany</surname>
<given-names>R</given-names>
</name>
<name>
<surname>Balazs</surname>
<given-names>M</given-names>
</name>
<etal/>
</person-group> <article-title>Molecular Alterations Associated with Acquired Resistance to BRAFV600E Targeted Therapy in Melanoma Cells</article-title>. <source>Melanoma Res</source> (<year>2019</year>) <volume>29</volume>(<issue>4</issue>):<fpage>390</fpage>&#x2013;<lpage>400</lpage>. <pub-id pub-id-type="doi">10.1097/CMR.0000000000000588</pub-id> </citation>
</ref>
<ref id="B28">
<label>28.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Kijewska</surname>
<given-names>M</given-names>
</name>
<name>
<surname>Kocyk</surname>
<given-names>M</given-names>
</name>
<name>
<surname>Kloss</surname>
<given-names>M</given-names>
</name>
<name>
<surname>Stepniak</surname>
<given-names>K</given-names>
</name>
<name>
<surname>Korwek</surname>
<given-names>Z</given-names>
</name>
<name>
<surname>Polakowska</surname>
<given-names>R</given-names>
</name>
<etal/>
</person-group> <article-title>The Embryonic Type of SPP1 Transcriptional Regulation is Re-activated in Glioblastoma</article-title>. <source>Oncotarget</source> (<year>2017</year>) <volume>8</volume>(<issue>10</issue>):<fpage>16340</fpage>&#x2013;<lpage>55</lpage>. <pub-id pub-id-type="doi">10.18632/oncotarget.14092</pub-id> </citation>
</ref>
<ref id="B29">
<label>29.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>El Sharouni</surname>
<given-names>MA</given-names>
</name>
<name>
<surname>van Diest</surname>
<given-names>PJ</given-names>
</name>
<name>
<surname>Witkamp</surname>
<given-names>AJ</given-names>
</name>
<name>
<surname>Sigurdsson</surname>
<given-names>V</given-names>
</name>
<name>
<surname>van Gils</surname>
<given-names>CH</given-names>
</name>
</person-group>. <article-title>Subtyping Cutaneous Melanoma Matters</article-title>. <source>JNCI Cancer Spectr</source> (<year>2020</year>) <volume>4</volume>(<issue>6</issue>):<fpage>pkaa097</fpage>. <pub-id pub-id-type="doi">10.1093/jncics/pkaa097</pub-id> </citation>
</ref>
<ref id="B30">
<label>30.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Hao</surname>
<given-names>CC</given-names>
</name>
<name>
<surname>Cui</surname>
<given-names>YX</given-names>
</name>
<name>
<surname>Lane</surname>
<given-names>J</given-names>
</name>
<name>
<surname>Jia</surname>
<given-names>SQ</given-names>
</name>
<name>
<surname>Ji</surname>
<given-names>JF</given-names>
</name>
<name>
<surname>Jiang</surname>
<given-names>WG</given-names>
</name>
<etal/>
</person-group> <article-title>Distinctive Prognostic Value and Cellular Functions of Osteopontin Splice Variants in Human Gastric Cancer</article-title>. <source>Cells</source> (<year>2021</year>) <volume>10</volume>(<issue>7</issue>):<fpage>1820</fpage>. <pub-id pub-id-type="doi">10.3390/cells10071820</pub-id> </citation>
</ref>
<ref id="B31">
<label>31.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Sivakumar</surname>
<given-names>S</given-names>
</name>
<name>
<surname>Niranjali Devaraj</surname>
<given-names>S</given-names>
</name>
</person-group>. <article-title>Tertiary Structure Prediction and Identification of Druggable Pocket in the Cancer Biomarker - Osteopontin-C</article-title>. <source>J Diabetes Metab Disord</source> (<year>2014</year>) <volume>13</volume>(<issue>1</issue>):<fpage>13</fpage>. <pub-id pub-id-type="doi">10.1186/2251-6581-13-13</pub-id> </citation>
</ref>
<ref id="B32">
<label>32.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>He</surname>
<given-names>B</given-names>
</name>
<name>
<surname>Mirza</surname>
<given-names>M</given-names>
</name>
<name>
<surname>Weber</surname>
<given-names>GF</given-names>
</name>
</person-group>. <article-title>An Osteopontin Splice Variant Induces Anchorage Independence in Human Breast Cancer Cells</article-title>. <source>Oncogene</source> (<year>2006</year>) <volume>25</volume>(<issue>15</issue>):<fpage>2192</fpage>&#x2013;<lpage>202</lpage>. <pub-id pub-id-type="doi">10.1038/sj.onc.1209248</pub-id> </citation>
</ref>
<ref id="B33">
<label>33.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Nishimichi</surname>
<given-names>N</given-names>
</name>
<name>
<surname>Hayashita-Kinoh</surname>
<given-names>H</given-names>
</name>
<name>
<surname>Chen</surname>
<given-names>C</given-names>
</name>
<name>
<surname>Matsuda</surname>
<given-names>H</given-names>
</name>
<name>
<surname>Sheppard</surname>
<given-names>D</given-names>
</name>
<name>
<surname>Yokosaki</surname>
<given-names>Y</given-names>
</name>
<etal/>
</person-group> <article-title>Osteopontin Undergoes Polymerization <italic>In Vivo</italic> and Gains Chemotactic Activity for Neutrophils Mediated by Integrin Alpha9beta1</article-title>. <source>J Biol Chem</source> (<year>2011</year>) <volume>286</volume>(<issue>13</issue>):<fpage>11170</fpage>&#x2013;<lpage>8</lpage>. <pub-id pub-id-type="doi">10.1074/jbc.M110.189258</pub-id> </citation>
</ref>
<ref id="B34">
<label>34.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Tilli</surname>
<given-names>TM</given-names>
</name>
<name>
<surname>Franco</surname>
<given-names>VF</given-names>
</name>
<name>
<surname>Robbs</surname>
<given-names>BK</given-names>
</name>
<name>
<surname>Wanderley</surname>
<given-names>JL</given-names>
</name>
<name>
<surname>da Silva</surname>
<given-names>FR</given-names>
</name>
<name>
<surname>de Mello</surname>
<given-names>KD</given-names>
</name>
<etal/>
</person-group> <article-title>Osteopontin-c Splicing Isoform Contributes to Ovarian Cancer Progression</article-title>. <source>Mol Cancer Res</source> (<year>2011</year>) <volume>9</volume>(<issue>3</issue>):<fpage>280</fpage>&#x2013;<lpage>93</lpage>. <pub-id pub-id-type="doi">10.1158/1541-7786.MCR-10-0463</pub-id> </citation>
</ref>
<ref id="B35">
<label>35.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Silva</surname>
<given-names>GR</given-names>
</name>
<name>
<surname>Mattos</surname>
<given-names>DS</given-names>
</name>
<name>
<surname>Bastos</surname>
<given-names>ACF</given-names>
</name>
<name>
<surname>Viana</surname>
<given-names>B</given-names>
</name>
<name>
<surname>Brum</surname>
<given-names>MCM</given-names>
</name>
<name>
<surname>Ferreira</surname>
<given-names>LB</given-names>
</name>
<etal/>
</person-group> <article-title>Osteopontin-4 and Osteopontin-5 Splice Variants are Expressed in Several Tumor Cell Lines</article-title>. <source>Mol Biol Rep</source> (<year>2020</year>) <volume>47</volume>(<issue>10</issue>):<fpage>8339</fpage>&#x2013;<lpage>45</lpage>. <pub-id pub-id-type="doi">10.1007/s11033-020-05867-9</pub-id> </citation>
</ref>
<ref id="B36">
<label>36.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Danen</surname>
<given-names>EH</given-names>
</name>
<name>
<surname>Ten Berge</surname>
<given-names>PJ</given-names>
</name>
<name>
<surname>Van Muijen</surname>
<given-names>GN</given-names>
</name>
<name>
<surname>Van &#x27;t Hof-Grootenboer</surname>
<given-names>AE</given-names>
</name>
<name>
<surname>Brocker</surname>
<given-names>EB</given-names>
</name>
<name>
<surname>Ruiter</surname>
<given-names>DJ</given-names>
</name>
<etal/>
</person-group> <article-title>Emergence of &#x3b1;5&#x3b2;1 Fibronectin- and &#x3b1;v&#x3b2;3 Vitronectin-Receptor Expression in Melanocytic Tumour Progression</article-title>. <source>Histopathology</source> (<year>1994</year>) <volume>24</volume>(<issue>3</issue>):<fpage>249</fpage>&#x2013;<lpage>56</lpage>. <pub-id pub-id-type="doi">10.1111/j.1365-2559.1994.tb00517.x</pub-id> </citation>
</ref>
<ref id="B37">
<label>37.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Hieken</surname>
<given-names>TJ</given-names>
</name>
<name>
<surname>Ronan</surname>
<given-names>SG</given-names>
</name>
<name>
<surname>Farolan</surname>
<given-names>M</given-names>
</name>
<name>
<surname>Shilkaitis</surname>
<given-names>AL</given-names>
</name>
<name>
<surname>Das Gupta</surname>
<given-names>TK</given-names>
</name>
</person-group>. <article-title>Molecular Prognostic Markers in Intermediate-Thickness Cutaneous Malignant Melanoma</article-title>. <source>Cancer</source> (<year>1999</year>) <volume>85</volume>(<issue>2</issue>):<fpage>375</fpage>&#x2013;<lpage>82</lpage>. <pub-id pub-id-type="doi">10.1002/(sici)1097-0142(19990115)85:2&#x3c;375:aid-cncr15&#x3e;3.0.co;2-1</pub-id> </citation>
</ref>
<ref id="B38">
<label>38.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Arias-Mejias</surname>
<given-names>SM</given-names>
</name>
<name>
<surname>Warda</surname>
<given-names>KY</given-names>
</name>
<name>
<surname>Quattrocchi</surname>
<given-names>E</given-names>
</name>
<name>
<surname>Alonso-Quinones</surname>
<given-names>H</given-names>
</name>
<name>
<surname>Sominidi-Damodaran</surname>
<given-names>S</given-names>
</name>
<name>
<surname>Meves</surname>
<given-names>A</given-names>
</name>
<etal/>
</person-group> <article-title>The Role of Integrins in Melanoma: A Review</article-title>. <source>Int J Dermatol</source> (<year>2020</year>) <volume>59</volume>(<issue>5</issue>):<fpage>525</fpage>&#x2013;<lpage>34</lpage>. <pub-id pub-id-type="doi">10.1111/ijd.14850</pub-id> </citation>
</ref>
<ref id="B39">
<label>39.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Huang</surname>
<given-names>R</given-names>
</name>
<name>
<surname>Rofstad</surname>
<given-names>EK</given-names>
</name>
</person-group>. <article-title>Integrins as Therapeutic Targets in the Organ-specific Metastasis of Human Malignant Melanoma</article-title>. <source>J Exp Clin Cancer Res</source> (<year>2018</year>) <volume>37</volume>(<issue>1</issue>):<fpage>92</fpage>. <pub-id pub-id-type="doi">10.1186/s13046-018-0763-x</pub-id> </citation>
</ref>
<ref id="B40">
<label>40.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Vizkeleti</surname>
<given-names>L</given-names>
</name>
<name>
<surname>Kiss</surname>
<given-names>T</given-names>
</name>
<name>
<surname>Koroknai</surname>
<given-names>V</given-names>
</name>
<name>
<surname>Ecsedi</surname>
<given-names>S</given-names>
</name>
<name>
<surname>Papp</surname>
<given-names>O</given-names>
</name>
<name>
<surname>Szasz</surname>
<given-names>I</given-names>
</name>
<etal/>
</person-group> <article-title>Altered Integrin Expression Patterns Shown by Microarray in Human Cutaneous Melanoma</article-title>. <source>Melanoma Res</source> (<year>2017</year>) <volume>27</volume>(<issue>3</issue>):<fpage>180</fpage>&#x2013;<lpage>8</lpage>. <pub-id pub-id-type="doi">10.1097/Cmr.0000000000000322</pub-id> </citation>
</ref>
<ref id="B41">
<label>41.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Martin</surname>
<given-names>TA</given-names>
</name>
<name>
<surname>Jiang</surname>
<given-names>WG</given-names>
</name>
</person-group>. <article-title>Evaluation of the Expression of Stem Cell Markers in Human Breast Cancer Reveals a Correlation with Clinical Progression and Metastatic Disease in Ductal Carcinoma</article-title>. <source>Oncol Rep</source> (<year>2014</year>) <volume>31</volume>(<issue>1</issue>):<fpage>262</fpage>&#x2013;<lpage>72</lpage>. <pub-id pub-id-type="doi">10.3892/or.2013.2813</pub-id> </citation>
</ref>
<ref id="B42">
<label>42.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Ramirez</surname>
<given-names>NE</given-names>
</name>
<name>
<surname>Zhang</surname>
<given-names>Z</given-names>
</name>
<name>
<surname>Madamanchi</surname>
<given-names>A</given-names>
</name>
<name>
<surname>Boyd</surname>
<given-names>KL</given-names>
</name>
<name>
<surname>O&#x27;Rear</surname>
<given-names>LD</given-names>
</name>
<name>
<surname>Nashabi</surname>
<given-names>A</given-names>
</name>
<etal/>
</person-group> <article-title>The &#x3b1;&#x3b2; Integrin is a Metastasis Suppressor in Mouse Models and Human Cancer</article-title>. <source>J Clin Invest</source> (<year>2011</year>) <volume>121</volume>(<issue>1</issue>):<fpage>226</fpage>&#x2013;<lpage>37</lpage>. <pub-id pub-id-type="doi">10.1172/JCI42328</pub-id> </citation>
</ref>
<ref id="B43">
<label>43.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Madamanchi</surname>
<given-names>A</given-names>
</name>
<name>
<surname>Santoro</surname>
<given-names>SA</given-names>
</name>
<name>
<surname>Zutter</surname>
<given-names>MM</given-names>
</name>
</person-group>. <article-title>&#x3b1;2&#x3b2;1 Integrin</article-title>. <source>Adv Exp Med Biol</source> (<year>2014</year>) <volume>819</volume>:<fpage>41</fpage>&#x2013;<lpage>60</lpage>. <pub-id pub-id-type="doi">10.1007/978-94-017-9153-3_3</pub-id> </citation>
</ref>
<ref id="B44">
<label>44.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Bartolome</surname>
<given-names>RA</given-names>
</name>
<name>
<surname>Torres</surname>
<given-names>S</given-names>
</name>
<name>
<surname>Isern de Val</surname>
<given-names>S</given-names>
</name>
<name>
<surname>Escudero-Paniagua</surname>
<given-names>B</given-names>
</name>
<name>
<surname>Calvino</surname>
<given-names>E</given-names>
</name>
<name>
<surname>Teixido</surname>
<given-names>J</given-names>
</name>
<etal/>
</person-group> <article-title>VE-Cadherin RGD Motifs Promote Metastasis and Constitute a Potential Therapeutic Target in Melanoma and Breast Cancers</article-title>. <source>Oncotarget</source> (<year>2017</year>) <volume>8</volume>(<issue>1</issue>):<fpage>215</fpage>&#x2013;<lpage>27</lpage>. <pub-id pub-id-type="doi">10.18632/oncotarget.13832</pub-id> </citation>
</ref>
<ref id="B45">
<label>45.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Yoshimura</surname>
<given-names>K</given-names>
</name>
<name>
<surname>Meckel</surname>
<given-names>KF</given-names>
</name>
<name>
<surname>Laird</surname>
<given-names>LS</given-names>
</name>
<name>
<surname>Chia</surname>
<given-names>CY</given-names>
</name>
<name>
<surname>Park</surname>
<given-names>JJ</given-names>
</name>
<name>
<surname>Olino</surname>
<given-names>KL</given-names>
</name>
<etal/>
</person-group> <article-title>Integrin Alpha2 Mediates Selective Metastasis to the Liver</article-title>. <source>Cancer Res</source> (<year>2009</year>) <volume>69</volume>(<issue>18</issue>):<fpage>7320</fpage>&#x2013;<lpage>8</lpage>. <pub-id pub-id-type="doi">10.1158/0008-5472.CAN-09-0315</pub-id> </citation>
</ref>
<ref id="B46">
<label>46.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Naci</surname>
<given-names>D</given-names>
</name>
<name>
<surname>Vuori</surname>
<given-names>K</given-names>
</name>
<name>
<surname>Aoudjit</surname>
<given-names>F</given-names>
</name>
</person-group>. <article-title>Alpha2beta1 Integrin in Cancer Development and Chemoresistance</article-title>. <source>Semin Cancer Biol</source> (<year>2015</year>) <volume>35</volume>:<fpage>145</fpage>&#x2013;<lpage>53</lpage>. <pub-id pub-id-type="doi">10.1016/j.semcancer.2015.08.004</pub-id> </citation>
</ref>
<ref id="B47">
<label>47.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Di Paola</surname>
<given-names>J</given-names>
</name>
<name>
<surname>Jugessur</surname>
<given-names>A</given-names>
</name>
<name>
<surname>Goldman</surname>
<given-names>T</given-names>
</name>
<name>
<surname>Reiland</surname>
<given-names>J</given-names>
</name>
<name>
<surname>Tallman</surname>
<given-names>D</given-names>
</name>
<name>
<surname>Sayago</surname>
<given-names>C</given-names>
</name>
<etal/>
</person-group> <article-title>Platelet Glycoprotein I(b)alpha and Integrin Alpha2 Beta1 Polymorphisms: Gene Frequencies and Linkage Disequilibrium in a Population Diversity Panel</article-title>. <source>J Thromb Haemost</source> (<year>2005</year>) <volume>3</volume>(<issue>7</issue>):<fpage>1511</fpage>&#x2013;<lpage>21</lpage>. <pub-id pub-id-type="doi">10.1111/j.1538-7836.2005.01273.x</pub-id> </citation>
</ref>
<ref id="B48">
<label>48.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Cheli</surname>
<given-names>Y</given-names>
</name>
<name>
<surname>Williams</surname>
<given-names>SA</given-names>
</name>
<name>
<surname>Ballotti</surname>
<given-names>R</given-names>
</name>
<name>
<surname>Nugent</surname>
<given-names>DJ</given-names>
</name>
<name>
<surname>Kunicki</surname>
<given-names>TJ</given-names>
</name>
</person-group>. <article-title>Enhanced Binding of poly(ADP-Ribose)polymerase-1 and Ku80/70 to the ITGA2 Promoter via an Extended Cytosine-Adenosine Repeat</article-title>. <source>PLoS One</source> (<year>2010</year>) <volume>5</volume>(<issue>1</issue>):<fpage>e8743</fpage>. <pub-id pub-id-type="doi">10.1371/journal.pone.0008743</pub-id> </citation>
</ref>
<ref id="B49">
<label>49.</label>
<citation citation-type="journal">
<person-group person-group-type="author">
<name>
<surname>Adorno-Cruz</surname>
<given-names>V</given-names>
</name>
<name>
<surname>Liu</surname>
<given-names>H</given-names>
</name>
</person-group>. <article-title>Regulation and Functions of Integrin &#x3b1;2 in Cell Adhesion and Disease</article-title>. <source>Genes Dis</source> (<year>2019</year>) <volume>6</volume>(<issue>1</issue>):<fpage>16</fpage>&#x2013;<lpage>24</lpage>. <pub-id pub-id-type="doi">10.1016/j.gendis.2018.12.003</pub-id> </citation>
</ref>
</ref-list>
</back>
</article>